Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_D08
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.5
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 28 1.5
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 4.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 4.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 6.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.0
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 8.0
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 8.0
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 26 8.0
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 282 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 398
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 28.3 bits (60), Expect = 1.5
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 4/130 (3%)
Frame = +3
Query: 306 NPTKSTAVLFKRGRPPNTTLS----IPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLG 473
+P KS+ + ++ ++ LS P R + PAP RP++ P+
Sbjct: 267 SPMKSSRDISRKPSMASSVLSPSDYFPQHRRFQSAPAPIPRPVSTLI-PLTQVRTTASNV 325
Query: 474 VTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPGHDLCKCS 653
+ + T RP + L + + + RR + + P H++ +
Sbjct: 326 IKPRPQTTERPSTAQSFRKGGGFLKKTFKKLLRRGSSKRKPSLQPTPPVSYPAHNVPQKG 385
Query: 654 VRSRGPHTLK 683
VR PHTLK
Sbjct: 386 VRPASPHTLK 395
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 451 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 561
P SN + ST H P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 38 TVRSDIESRERVPGPXHVTAGVPQGSALSPXTIQFVYQR--YTPVSGDPSG 184
T+ SD ESR R + G+ G+ + P I YQ P G P G
Sbjct: 399 TILSDPESRRRFDSGVDLEPGMEGGAGMDPFDILRAYQAGGSFPGGGFPGG 449
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 90 SQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 194
+QP+ K PSP F L+ + RS ET+L +A
Sbjct: 49 TQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 512 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 408
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 159 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 329
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 330 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 419
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 564 ICRRSKMSLRNKVTLYKTCIRPGHDLC 644
+C+R L N++ C P H LC
Sbjct: 195 VCQRGHSPLSNRIVFCDGCNSPYHQLC 221
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 8.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 330 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 500
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 501 RPHIKTVRDR 530
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 36 EPFVPISSRGNAFPAPXTSQPE 101
+PF PIS + A+ P T PE
Sbjct: 116 DPFAPISVKSGAWKKPYTKVPE 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,702
Number of Sequences: 5004
Number of extensions: 72511
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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