Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_D08
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    39   0.005
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    38   0.009
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    32   0.46 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    31   1.1  
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    30   1.9  
Z74026-2|CAD54122.1|  588|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   5.7  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   5.7  
Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF047659-9|AAC04421.1|  254|Caenorhabditis elegans Hypothetical ...    28   9.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 31/127 (24%), Positives = 53/127 (41%)
 Frame = +3

Query: 132 LFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINP 311
           LF+ Y+ D+P   +T L  +ADD +I    +K      ++Q     + ++ ++  + I+ 
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602

Query: 312 TKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLGVTLDSR 491
            KST  +F              P      P      I   D PIP     K LG+TL++ 
Sbjct: 603 EKSTVTVFSCD-----------PKEHKTKP-----DIYWMDDPIPVINAPKLLGITLNTM 646

Query: 492 MTFRPHI 512
              + H+
Sbjct: 647 TGTKDHV 653


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 2/169 (1%)
 Frame = +3

Query: 129 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRID 302
           LLF +Y+NDI       +A   FADDT +Y S   K      LQ+A   +  W +  ++ 
Sbjct: 86  LLFGIYVNDISSILPEKVACKQFADDTKLYAS-TPKTESENNLQSALDAVVDWTKGSKLT 144

Query: 303 INPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLGVTL 482
           +N +K              T+ + +  RR++          +   PI      + LG  +
Sbjct: 145 LNQSK--------------TVHVTVGKRRID------FKYHLDGYPIERKAITRDLGFLI 184

Query: 483 DSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRP 629
             ++ F  H +   + A F L  ++      +K  +   + LYKT IRP
Sbjct: 185 SEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---ILLYKTFIRP 230


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 318 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAP 455
           ST   +    PP T    P P  R+ NP+P+ +P  +   P P  P
Sbjct: 449 STGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPP 494


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 318 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAP 455
           ST   +    PP T    P P  R+ NP+P+ +P  +   P P  P
Sbjct: 456 STGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPP 501


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +3

Query: 417 PITMYD-QPIPWAPK--VKYLGVTLDSRMTFRPHIKTV 521
           P T+Y    +P +P    + LG+  DS++TF+PHIK +
Sbjct: 178 PKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI 215


>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
            M02E1.1a protein.
          Length = 1077

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 363  LSIPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRA 533
            ++ PLP+     P   VRP T +D  IP+     ++G     + T    +   R RA
Sbjct: 890  MATPLPSFN-GRPPSVVRPRTAFDMNIPYGTDSNFIGAKQFKKNTLSVEMTNARQRA 945


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
           protein Y75B8A.13 protein.
          Length = 1420

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 336 KRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAP 455
           K  +PP   + +PLP RR +   P V P  +   P P  P
Sbjct: 233 KTTKPPQHLIILPLPPRRASPAPPRVIPHVIMQPPRPRPP 272


>Z74026-2|CAD54122.1|  588|Caenorhabditis elegans Hypothetical
           protein B0240.4 protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 378 PTRRVNNPAPAVRPITMYDQPIPW 449
           P R V++P    +PIT++DQ + W
Sbjct: 46  PNRTVSSPRVQQKPITIFDQIVDW 69


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 738  PRGSDGYPAKTGLNNLKG 685
            PRG DG+P + GL+ L G
Sbjct: 1153 PRGDDGFPGRDGLDGLPG 1170


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 738  PRGSDGYPAKTGLNNLKG 685
            PRG DG+P + GL+ L G
Sbjct: 1410 PRGDDGFPGRDGLDGLPG 1427


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 738  PRGSDGYPAKTGLNNLKG 685
            PRG DG+P + GL+ L G
Sbjct: 1409 PRGDDGFPGRDGLDGLPG 1426


>Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical
           protein F56H6.11 protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 394 LTRLVGRGMLSVVFGGRPLLKSTAVLFVGLMSMRHFRNHCPM 269
           LT  VG G+L ++    PLL +  + ++G +S   +  H P+
Sbjct: 275 LTATVGTGLLMLLSENNPLLSNKVLTYIGDISYSLYLVHWPI 316


>AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.5 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 424 VIGRTAGAGLLTRLVGRGMLSVVFGGRPLLKSTAVLFVGLMSMRHFRN 281
           V+GRT G  LL  +   GM++++    P LK   + F+GL  + H  N
Sbjct: 141 VVGRTKG--LLPYV---GMVTIIMNDYPKLKYAVLAFLGLFVLLHKEN 183


>AF047659-9|AAC04421.1|  254|Caenorhabditis elegans Hypothetical
           protein K07H8.9 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = -2

Query: 578 TSPTYHRVETS*DEGGTIAYRLDVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANGGGG 399
           T PTY+ +       GT A +L+    C   + G+          YG  +H+   +G   
Sbjct: 131 TYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNH-----SNKMYGNALHKTHGDGSQD 185

Query: 398 VIDAPSRERDAQRGVRR 348
            ID P R      G RR
Sbjct: 186 AIDLPLRVIVETSGPRR 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,592,794
Number of Sequences: 27780
Number of extensions: 454516
Number of successful extensions: 1645
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)