Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_D07
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    30   2.6  
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882...    29   4.6  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    29   4.6  

>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 404 RGERSPRRXLQPRLAVPRQASTSVPRTPAKXCSPTPLRSNS 282
           R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


>07_03_1400 +
           26287124-26287298,26287925-26288007,26288141-26288270,
           26288369-26288442,26288797-26288883,26288976-26289100,
           26289232-26289292,26289606-26289683,26289785-26289890,
           26289978-26290123,26290264-26290380
          Length = 393

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 464 ISMQLDXWXNDMQTCTFKFGSRMXNSDXMDFXIDKKYTGM 583
           ++++   W ND+++C F+  SR  +S+ M+  +  ++TG+
Sbjct: 83  VNLEGGGWCNDVKSCVFRKSSRRGSSNHMESQL--QFTGI 120


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 407 GRGERSPRRXLQPRLAVPRQASTSVPRTP 321
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,465,183
Number of Sequences: 37544
Number of extensions: 346711
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)