Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_C07
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   2.0  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   7.9  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   7.9  

>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 398 SLPTRTSPRCDAGSARSQSELFNDTSQS 481
           S+PT TSP  +  + RS + + N+T QS
Sbjct: 231 SVPTTTSPNNENNALRSTANVINNTRQS 258


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +2

Query: 299 PSNRNTPL---LHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 469
           P +RN P+   + G       T  +      P+  +S+   +SP   AG   + S LF+ 
Sbjct: 74  PHSRNPPIFEAIQGEQPSDIDTLNLKKVKSGPTSPSSIDRLSSPNAKAGDILA-SSLFSS 132

Query: 470 TSQSPTRRR 496
            S   T RR
Sbjct: 133 GSPPDTTRR 141


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -2

Query: 369 PSTARVPSPCLFLP*SSGVFRFEGWGSGCNYT----ETLELLSQGV 244
           P  A   S C   P +SG F     G  CN T    ETL  L+Q V
Sbjct: 150 PKNANSSSTCTRTPPTSGRFSIRHDGQVCNITIAAEETLRQLAQQV 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,762
Number of Sequences: 5004
Number of extensions: 46204
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)