Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_C04
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   3.3  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   5.8  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   7.6  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 562 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIXMFSTHRDCESTAY 696
           Y+C  +  +S G L  SED ++ W    K GLI  F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 560 RPSQTPRLAVSSNRITREF*PATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETM 381
           +PS +PR++V S   +    P T  S T PL  +   + A   I   +  P     N + 
Sbjct: 219 KPSASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNVTN-ASGSISKNSTSPSKVKVNAST 277

Query: 380 KVV 372
           K+V
Sbjct: 278 KIV 280


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 679  SPYAY*TXGSSQLLPFCSTRGF 614
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,166
Number of Sequences: 5004
Number of extensions: 68088
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)