Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_C04
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 32 0.65
01_06_0456 + 29521282-29522064 31 1.1
03_04_0006 + 16257288-16259522 30 2.6
06_03_1448 + 30235336-30236763 29 3.5
06_03_1443 + 30182018-30183445 29 3.5
06_03_1440 + 30166515-30167942 29 3.5
06_03_1437 + 30151030-30152457 29 3.5
06_03_1429 + 30100834-30102261 29 3.5
06_03_1425 + 30084383-30085810 29 3.5
06_03_1420 - 30053713-30055140 29 3.5
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 3.5
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 29 4.6
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.6
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.1
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 6.1
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 28 8.0
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 139 DENSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 291
D+ + PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1391 DQGNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -2
Query: 541 AWQC--PRTGSRGSFNRRRAFPPRHHSARLER----NTVRPPILSTA 419
AW+C P +G+RG RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 352 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 200
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_1448 + 30235336-30236763
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 549 NSPPGSVLEPDHAGVLTGDERFRHVTTLHAWNETPCARRYYRPRTAS 409
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 549 NSPPGSVLEPDHAGVLTGDERFRHVTTLHAWNETPCARRYYRPRTAS 409
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 549 NSPPGSVLEPDHAGVLTGDERFRHVTTLHAWNETPCARRYYRPRTAS 409
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 549 NSPPGSVLEPDHAGVLTGDERFRHVTTLHAWNETPCARRYYRPRTAS 409
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 549 NSPPGSVLEPDHAGVLTGDERFRHVTTLHAWNETPCARRYYRPRTAS 409
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 549 NSPPGSVLEPDHAGVLTGDERFRHVTTLHAWNETPCARRYYRPRTAS 409
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 549 NSPPGSVLEPDHAGVLTGDERFRHVTTLHAWNETPCARRYYRPRTAS 409
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 441 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRXAQRGQKP 620
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 621 RVEQKGK 641
RV+ G+
Sbjct: 114 RVDNGGR 120
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 559 APVKLPAWQCPRTGSRGSFNRRRAFPPRHHSARLERNTVRPP 434
+P PA PR+GS G+F+ RH R R T RPP
Sbjct: 48 SPNAAPAPTAPRSGS-GAFHHSGNTLVRHSDRRPARGTPRPP 88
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 352 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 227
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 474 TTLHAWNETPCARRYY 427
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 482 RKRSSPVKTPA*SGSRTLPGGEFDWGGTSV 571
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 525 RGHCQAGSLTGAVHLSKNNAGVLRXAQRGQKPRVEQKGKSWL 650
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,339,485
Number of Sequences: 37544
Number of extensions: 535386
Number of successful extensions: 1674
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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