Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_B24
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 264 2e-71
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 263 2e-71
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 2.7
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.6
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 27 4.7
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 4.7
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 26 6.2
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.2
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 6.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 8.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 8.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 8.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 8.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 8.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 8.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 8.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 8.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 8.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 8.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 8.2
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 264 bits (646), Expect = 2e-71
Identities = 118/189 (62%), Positives = 151/189 (79%)
Frame = +3
Query: 90 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 269
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 270 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 449
K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 450 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 629
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 630 NGGTIEDKV 656
NGG++ DKV
Sbjct: 184 NGGSVADKV 192
Score = 49.6 bits (113), Expect = 6e-07
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +2
Query: 656 EWAREHLEKPXPVDSVFAPDEMIDCIGVTKGKG 754
EWAREH EK + S F +EMID IGVT+GKG
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 263 bits (645), Expect = 2e-71
Identities = 117/189 (61%), Positives = 151/189 (79%)
Frame = +3
Query: 90 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 269
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 270 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 449
K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 450 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 629
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 630 NGGTIEDKV 656
NGG++ DKV
Sbjct: 184 NGGSVADKV 192
Score = 49.6 bits (113), Expect = 6e-07
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +2
Query: 656 EWAREHLEKPXPVDSVFAPDEMIDCIGVTKGKG 754
EWAREH EK + S F +EMID IGVT+GKG
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 251 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 84
F N VG G+I D S + +R+VF D +G L ++SH +P V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 78 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 197
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 704 FAPDEMIDCIGVTKGKGY 757
F P + +D G+TKGKG+
Sbjct: 145 FKPKQYVDVKGITKGKGF 162
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 69 PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 245
P C H + S +P + G K FP D+P S P+ + G T +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350
Query: 246 REPDRPGSKI 275
+ P++ +I
Sbjct: 351 KVPEKSNKEI 360
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -1
Query: 750 LPLVTPMQSIISSGANTESTGIGFSRCSLAHSLCPRWYHR 631
LP+ P +I G E+ IG RC H YHR
Sbjct: 41 LPVTIP---VIIDGKEVETNTIGEQRCPFEHKKVVARYHR 77
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 543 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 653
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 349 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 501
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 731 IGVTKGKGYKVSFRCPR 781
I V KG +K++FRCPR
Sbjct: 510 IRVRKGDEHKLAFRCPR 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,458,389
Number of Sequences: 5004
Number of extensions: 72380
Number of successful extensions: 184
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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