Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_B24
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 264 6e-71
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 261 5e-70
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
05_04_0324 - 20273797-20274261 29 5.0
05_06_0074 + 25375431-25375631,25375785-25376195,25376474-253765... 29 6.6
01_05_0125 - 18382402-18382761,18382863-18383036 28 8.7
01_01_1051 + 8290395-8290760,8291611-8291820,8292874-8292978,829... 28 8.7
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 264 bits (647), Expect = 6e-71
Identities = 117/191 (61%), Positives = 151/191 (79%), Gaps = 1/191 (0%)
Frame = +3
Query: 90 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 269
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 270 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 449
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 450 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 626
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 627 LNGGTIEDKVN 659
+NGGTI DKV+
Sbjct: 186 INGGTIADKVD 196
Score = 48.4 bits (110), Expect = 8e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 656 EWAREHLEKPXPVDSVFAPDEMIDCIGVTKGKGYK 760
++ + EK PVD+VF DEMID IGVTKGKGY+
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYE 230
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 261 bits (640), Expect = 5e-70
Identities = 116/191 (60%), Positives = 150/191 (78%), Gaps = 1/191 (0%)
Frame = +3
Query: 90 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 269
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 270 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 449
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 450 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 626
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 627 LNGGTIEDKVN 659
+NGGTI DKV+
Sbjct: 186 INGGTIADKVD 196
Score = 48.4 bits (110), Expect = 8e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 656 EWAREHLEKPXPVDSVFAPDEMIDCIGVTKGKGYK 760
++ + EK PVD+VF DEMID IGVTKGKGY+
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYE 230
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 509 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 625
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 168 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 341
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 342 VGYIETPHGLRAL 380
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>05_06_0074 +
25375431-25375631,25375785-25376195,25376474-25376589,
25377016-25377064,25377722-25378247,25378339-25379060
Length = 674
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 780 LGQRKDTLYPLPLVTPMQSIISSGANTESTG-IGFSRCSLAHSLCP 646
+GQ + Y LPL P S + + + +S+G + F L ++CP
Sbjct: 296 IGQLEHQQYNLPLDLPPNSFVDANNSAQSSGDVFFHMSDLLTTMCP 341
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 423 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 319
++ +L PPR ST R+V E C+ + R + +E
Sbjct: 47 ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
>01_01_1051 +
8290395-8290760,8291611-8291820,8292874-8292978,
8293040-8293048,8294426-8294539,8294632-8294796
Length = 322
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 704 FAPDEMIDCIGVTKGKGY 757
F P + +D G+TKGKG+
Sbjct: 174 FVPGQFVDVTGITKGKGF 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,320,136
Number of Sequences: 37544
Number of extensions: 509321
Number of successful extensions: 1146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -