Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_B18
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 30 0.48
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.84
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 1.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.5
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.9 bits (64), Expect = 0.48
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 663 GGGGGGXXXPPPPPPPP 713
G G PPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314
Score = 29.9 bits (64), Expect = 0.48
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 664 GGGGGGXXXPPPPPPPP 714
G G PPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 709 GGGGGGGXXXPPPPPP 662
G GG PPPPPP
Sbjct: 298 GDSANGGLPPPPPPPP 313
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.84
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 669 GGGGXXXPPPPPPPP 713
G G PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.84
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 670 GGGGXXXPPPPPPPP 714
G G PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 666 GGGGGXXXPPPPPPP 710
G G PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 706 GGGGGGXXXPPPPPP 662
G G G PPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 663 GGGGGGXXXPPPPPP 707
G G G PPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 23.8 bits (49), Expect(2) = 1.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 690 PPPPPPP 710
PPPPPPP
Sbjct: 24 PPPPPPP 30
Score = 22.2 bits (45), Expect(2) = 1.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 678 GXXXPPPPPP 707
G PPPPPP
Sbjct: 7 GNPPPPPPPP 16
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 663 GGGGGGXXXPPPPPPP 710
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 664 GGGGGGXXXPPPPPPP 711
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 667 GGGGGXXXPPPPPPPP 714
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 692 PPPPPPPP 715
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 692 PPPPPPPP 715
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 690 PPPPPPPP 713
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 692 PPPPPPPP 715
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,325
Number of Sequences: 5004
Number of extensions: 20692
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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