Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_B09
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 173 2e-44
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 103 3e-23
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 100 5e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 95 1e-20
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 94 2e-20
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 92 1e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 87 4e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 84 2e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 82 9e-17
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 82 1e-16
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 80 5e-16
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 76 6e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 75 2e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 73 4e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 73 7e-14
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 69 1e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 68 2e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 66 8e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 64 2e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 64 3e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 64 3e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 57 3e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 53 5e-08
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 1.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.9
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 27 4.5
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 7.8
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 7.8
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 173 bits (422), Expect = 2e-44
Identities = 89/196 (45%), Positives = 124/196 (63%), Gaps = 1/196 (0%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q H+V ++A F +K QE LR+ PDIVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 358 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 537
H+RN+ F + +IE++V+DEADRML++ FA+++ EII+ C RQTMLFSATM+++V DL
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDL 453
Query: 538 AAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKERECTREGDAWRXXFC-XTFRXRTVXFX 714
+SL +PV++FV++ K A L QEFVR+R +RE R A C F RT+ F
Sbjct: 454 IRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLR--PAMLIYLCKELFHRRTIIFF 511
Query: 715 QTXXXAXRXXXXLGIL 762
++ A + G+L
Sbjct: 512 RSKAFAHKMRVIFGLL 527
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAK 152
L F PT IQ TIP+ALLGKD+ +++PILERLLY+ K
Sbjct: 277 LGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPK 326
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 103 bits (247), Expect = 3e-23
Identities = 52/137 (37%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Frame = +1
Query: 172 GXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRL 351
G +++ PTREL Q+ V ++L ++ + + + L + ++++ATPGRL
Sbjct: 163 GVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRL 222
Query: 352 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMSEEV 528
+DH++NT F ++ LV+DEADR+L+ F ++M++I++ S RQT+LFSAT + +V
Sbjct: 223 LDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKV 282
Query: 529 KDLAAVSLKKPVKLFVN 579
+DLA +SL KP L+VN
Sbjct: 283 EDLARISL-KPGPLYVN 298
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 99.5 bits (237), Expect = 5e-22
Identities = 51/148 (34%), Positives = 83/148 (56%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
+VL PTREL Q+ + D+ Q L + P +++ TPGRL+D
Sbjct: 118 VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 358 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 537
H+ NT F L +++ L++DEADR+LD F + +I++ +R+T+LFSATM+ +V+ L
Sbjct: 178 HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKL 237
Query: 538 AAVSLKKPVKLFVNSNKEVAFNLRQEFV 621
SL +PV++ V+S L Q ++
Sbjct: 238 QRASLHQPVRVAVSSKFSTVDTLIQRYL 265
Score = 31.1 bits (67), Expect = 0.21
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
L F PTPIQ IP+ L +DV + LP+++ L
Sbjct: 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQEL 108
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 95.1 bits (226), Expect = 1e-20
Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Frame = +1
Query: 151 KEGTGSPGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIV 330
K G G P +++ PTREL Q+ + + +K Q + L++ +IV
Sbjct: 487 KTGEG-PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIV 545
Query: 331 IATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLF 504
+ TPGR+ID + LH LVLDEADRM D F Q+ II P RQT+LF
Sbjct: 546 VCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLF 605
Query: 505 SATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKE 636
SAT ++ LA LKKPV++ V VA + Q V +R E
Sbjct: 606 SATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQ-IVEVRPE 648
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
L + PT IQA IP G+DV ++LP+ +
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHI 480
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 94.3 bits (224), Expect = 2e-20
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L P REL Q V + ++ ++ Q S+L PDIV+ATPGR +
Sbjct: 143 LILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL- 201
Query: 358 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 537
H++ L SIE +V DEADR+ + FA Q+ EI+ RQT+LFSAT+ + D
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDF 261
Query: 538 AAVSLKKPVKLFVNSNKEVAFNLRQEFVRIR-KERE 642
A L+ PV + ++ +V+ +L+ F ++ ERE
Sbjct: 262 AKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAERE 297
Score = 34.7 bits (76), Expect = 0.017
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F PTPIQ TIP+ L G+DV +++P++E L
Sbjct: 89 FKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL 131
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 91.9 bits (218), Expect = 1e-19
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Frame = +1
Query: 172 GXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRL 351
G LV+ PTREL Q ++ + + K ++ L + +I++ TPGRL
Sbjct: 113 GALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRL 171
Query: 352 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVK 531
+ HI +F +++L+LDEADR+LD F + I+ RQTMLFSAT ++ VK
Sbjct: 172 LQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVK 231
Query: 532 DLAAVSLKKP--VKLFVNSNKEVAFNLRQEFVRI 627
DLA +SL+ P + + N NL Q ++ +
Sbjct: 232 DLARLSLQNPDFISVHENDTSSTPSNLNQFYLTV 265
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 86.6 bits (205), Expect = 4e-18
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Frame = +1
Query: 169 PGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P L+L PTREL Q+H +R+ D++ Q + Q D++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS----PKRQTMLFSATM 516
L+D I + L +I+ LVLDEADRMLD F Q++ I+ +RQT++FSAT
Sbjct: 316 LVDLI-DRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATF 374
Query: 517 SEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRI 627
+++ LA LK V L V + N+ Q+ V +
Sbjct: 375 PRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHV 411
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 128
+ PTP+Q +IPI G+D+ ++ PIL
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 84.2 bits (199), Expect = 2e-17
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Frame = +1
Query: 169 PGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P LV+ PTREL Q + L Q K +++ +N ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAKNASVIIGTPGR 295
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-----SPKRQTMLFSAT 513
L+D I N S + LVLDEADRMLD F + ++ II + RQT+ FSAT
Sbjct: 296 LLDLI-NDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
Query: 514 MSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRI 627
E V+ LAA LK PVK+ + S++ A + V I
Sbjct: 355 WPESVRALAATFLKDPVKITIGSDELAASQNITQIVEI 392
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 6 DFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
++ PTPIQAAT P L G+DV + +P L+ L
Sbjct: 184 NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL 227
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 82.2 bits (194), Expect = 9e-17
Identities = 54/149 (36%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Frame = +1
Query: 169 PGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P LVL PTREL Q+ + + Q L + +I IATPGR
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGR 255
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEV 528
L+D + + + L + LVLDEADRMLD F Q+++I+ Q P RQT++FSAT +EV
Sbjct: 256 LLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEV 314
Query: 529 KDLAAVSLKKPVKLFVNS-NKEVAFNLRQ 612
+ LA L +++ V S + + N++Q
Sbjct: 315 QRLARDYLNDYIQVTVGSLDLAASHNIKQ 343
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 3 LDFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 128
L F PTPIQ P+A+ G+D+ Y LP +
Sbjct: 140 LGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 81.8 bits (193), Expect = 1e-16
Identities = 44/153 (28%), Positives = 78/153 (50%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q+ V L V+ + L+ +V+ TPGR+ D
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 358 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 537
I+ + ++++ VLDEAD ML F +Q+ +I + P Q +L SATM ++V ++
Sbjct: 151 MIQRR-ALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 538 AAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKE 636
++ P+++ V ++ ++Q +V + KE
Sbjct: 210 TTKFMRDPIRILVKKDELTLEGIKQFYVAVEKE 242
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 79.8 bits (188), Expect = 5e-16
Identities = 46/153 (30%), Positives = 75/153 (49%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q+ V L V L +V TPGR+ D
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 358 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 537
IR + ++++L+LDEAD +L++ F EQ+ +I R P Q ++ SAT+ ++V ++
Sbjct: 153 MIRRR-NLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Query: 538 AAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKE 636
PV++ V ++ L+Q F+ + KE
Sbjct: 212 TNKFTTNPVRILVKRDELTLEGLKQYFIAVEKE 244
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.2 bits (179), Expect = 6e-15
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVK--YQESVLRQNPDIVIATPGRL 351
L+LVPTREL QV+ V +L F + Q +L PDIVIATP R
Sbjct: 92 LLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRC 151
Query: 352 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVK 531
+ H+ + L ++ LV+DEAD ML + E MK + R Q+ L SAT+S+ +
Sbjct: 152 VVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIA 210
Query: 532 DLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKE 636
L + + P L V +KE + L Q V+ ++
Sbjct: 211 SLQKLVCRNPFILAV-KDKEASGKLTQYVVKCSEQ 244
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 6 DFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL 140
+F PT +Q+ TIP+AL GKD+ Y++PILE LL
Sbjct: 33 EFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLL 77
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 74.5 bits (175), Expect = 2e-14
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+L PTREL Q+ L D+ Q L + P +V+ATPGRL D
Sbjct: 79 LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Query: 358 HIRNTPS---FGLHSIEVLVLDEADRMLDEYFAEQMKEI--IRQCSPKRQTMLFSATMSE 522
IR+ GL I+ LV+DEADR+L FA+ + + + S RQT+LF+AT+++
Sbjct: 139 LIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTD 198
Query: 523 EVKDL---AAVSLKKPVKLF--VNSNKEVAFNLRQEFVRIRKE 636
++ L + K P+ L+ N V L+Q ++ + +
Sbjct: 199 AIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQ 241
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 73.3 bits (172), Expect = 4e-14
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Frame = +1
Query: 142 TRRKEGTGSPGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKY--------- 294
TRR G L++ PTREL Q+ VT++L + Y
Sbjct: 64 TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTN 123
Query: 295 -QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIR 471
S +NP +VI TPGRL + + + S +E+L+LDEAD ++D F ++ II
Sbjct: 124 DLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIIS 180
Query: 472 QCSPKRQTMLFSATMSEEVKD-LAAVSLKKPVKLFV 576
Q +R+T LFSATM++ V L L+ V++ V
Sbjct: 181 QLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSV 216
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F TP+QA IP+ L KD+ Y+LP +++
Sbjct: 21 FKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKV 63
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 72.5 bits (170), Expect = 7e-14
Identities = 44/172 (25%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Frame = +1
Query: 163 GSPGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXX-DVKYQESVLR---QNPDIV 330
G LVL TREL Q+ + +++ ++K + ++P IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 331 IATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFS 507
+ATPGRL +R ++S++ VLDE D++L+ ++E+ R P++Q M+FS
Sbjct: 178 VATPGRLNALVREK-ILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 508 ATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFN-LRQEFVRIRKERECTREGD 660
AT+S E++ + ++ P++++V+ ++ + L+Q +V++ ++ + + D
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKIND 288
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F HP+ +Q IP ++LG DV ++L L+++
Sbjct: 71 FEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI 113
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 68.5 bits (160), Expect = 1e-12
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV--LRQNPDIVIATPGRL 351
+++ PTREL Q++ +L+ F + K QE LR+ D+ I TP RL
Sbjct: 119 IIVAPTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 352 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMSEEV 528
+ I+ SF +E V+DEADR+ + F EQ I+ C S LFSAT+ V
Sbjct: 178 VQAIQTGLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRV 235
Query: 529 KDLAAVSLKKPVKLFV 576
++LA V P+++ V
Sbjct: 236 EELAKVVTVDPIRIIV 251
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ-NPDIVIATPGRLI 354
++L PTREL Q+ R+L +E+ +R+ N +++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 355 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMSEEVK 531
DH++N S + +LDEADR++D FAE + I + K + + FSATM +V
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVS 235
Query: 532 DL 537
++
Sbjct: 236 NV 237
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 65.7 bits (153), Expect = 8e-12
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQ---FXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
+++ PTREL Q++ V +L K +++ +R+ +I+I TPGR
Sbjct: 220 VIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGR 279
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII----RQCS--------PKRQ 492
L DH+ NT + + + +VLDE DR++D F E + +I+ Q S P R+
Sbjct: 280 LADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRK 339
Query: 493 -TMLFSATMSEEVKDLAAVSLKKPVKL 570
TML SATM + VK L+ +LK + L
Sbjct: 340 VTMLCSATMKDTVKRLSDSALKDALYL 366
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 64.5 bits (150), Expect = 2e-11
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNP-----DIVIATP 342
+V+VPTREL QV ++++ L + D++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 343 GRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS-PK 486
GRL+DHIRN SF L + +V+DEADR+LD+ F + + ++ + S PK
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 63.7 bits (148), Expect = 3e-11
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
LV+ PTREL Q+ + V+ Q+ +L ++P +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 358 HI-RNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII----RQCSPKRQTMLFSATMSE 522
I N + I+ LVLDEADR+L + E++ +++ +RQT +FSAT E
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Query: 523 EVKDLAAVSLKKPVKLFVNSNKE 591
++ ++K + NS E
Sbjct: 316 GLQQRLKKNMKGNITEKYNSPME 338
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL 140
F P PIQ+ IP A +G D+ + +PILE L
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCL 185
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 63.7 bits (148), Expect = 3e-11
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Frame = +1
Query: 169 PGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P +VL PTREL Q+ + A+ + Q + Q IV+ATPGR
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGR 385
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII-------------------R 471
L+D + F L +V+DEADRMLD F + + +I+
Sbjct: 386 LLDCLERR-LFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATAN 444
Query: 472 QCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 582
S +RQT++FSAT+ V +LA L +PV L + +
Sbjct: 445 SSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGN 481
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 57.2 bits (132), Expect = 3e-09
Identities = 37/131 (28%), Positives = 58/131 (44%)
Frame = +1
Query: 178 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 357
L+LVPTREL Q V + L + ++ L IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 358 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 537
+ V+DEAD++L F +++++ RQ L+SAT VK+
Sbjct: 176 -LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNF 234
Query: 538 AAVSLKKPVKL 570
L KP ++
Sbjct: 235 MDKHLNKPYEI 245
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 9 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 137
F P+PIQ +IPIAL G+D+ +++P LE++
Sbjct: 64 FERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKV 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 53.2 bits (122), Expect = 5e-08
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +1
Query: 169 PGXLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 348
P + L P+REL Q+ V ++ ++ K + + IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI----DAQIVIGTPGT 240
Query: 349 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR-QTMLFSATMSEE 525
++D ++ I+V VLDEAD MLD+ I+ P+ Q +LFSAT SE
Sbjct: 241 VMDLMKRR-QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
Query: 526 VKDLA 540
V+ A
Sbjct: 300 VEKYA 304
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 1.9
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 379 FGLHSIE---VLVLDEADRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMSEEVKDLAAV 546
F +HS + VLDE D LD+ ++ IRQ S Q ++ S K A V
Sbjct: 1146 FAIHSYQPSPFFVLDEIDAALDQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSEALV 1205
Query: 547 SLKKPVKLFVNSNKEVAFNLRQEFVRIRK 633
+ + + NS++ ++ N+R F I K
Sbjct: 1206 GIYRDQQ--ENSSRTLSINVRDYFFLILK 1232
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 395 SRFWCWTKLTGCWMNT 442
SRF+C+TK+ G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 653 SRVHSRSLRILTNSCLKLKATSLLEFTNNLTGFFKETAARSLTSS 519
SR +S+ L++L + T LLE L+ FFKE ++ +S
Sbjct: 404 SRAYSKCLKVLLG-IIAPNYTRLLELDRELSNFFKELIEVNIPTS 447
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 528 DFLAHGGREQHGL--TFRGTLTDD 463
DF+ +GGREQH + R LT+D
Sbjct: 82 DFIVYGGREQHLMFPLLRAGLTND 105
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +1
Query: 376 SFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLK 555
S G+ + E L D D + +E + +++ Q + SAT EEVK VS K
Sbjct: 463 SLGVFNYE-LKEDNDDLCTENDSSEGDSDSLKKVDFLGQIAMMSATDREEVKSSIVVSTK 521
Query: 556 KPVKLFVNSNKEVAF 600
K L E+ F
Sbjct: 522 KSTILEFAKEIEIIF 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,832
Number of Sequences: 5004
Number of extensions: 62095
Number of successful extensions: 229
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -