Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_B08
         (1238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    45   3e-05
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    33   0.021
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.44 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   1.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   2.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   5.4  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   7.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   7.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   7.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
 Frame = +3

Query: 762 KKXPPPPPPXXKKXXXXXP---PPXXXXXXXPXKKXXPXXXXXXXPPPPPPPPPXXXGGG 932
           K  PPPPP          P   PP       P     P       PPPPPPPPP    GG
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
 Frame = +3

Query: 765 KXPPPPPPXXKKXXXXXPPPXXXXXXXPXKKXXPXXXXXXXPPP------PPPPPPXXXG 926
           K PPPPPP         P P       P             PPP      PPPPPP    
Sbjct: 730 KSPPPPPPAV-----IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784

Query: 927 GGGGG 941
              GG
Sbjct: 785 VSAGG 789


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 33.5 bits (73), Expect = 0.062
 Identities = 18/55 (32%), Positives = 18/55 (32%)
 Frame = +3

Query: 771  PPPPPPXXKKXXXXXPPPXXXXXXXPXKKXXPXXXXXXXPPPPPPPPPXXXGGGG 935
            PPPPP   K        P                     PPPPPPPPP     GG
Sbjct: 908  PPPPPLPVKTSLNTFSHPDSVNIVANDTSVA--GVMPAFPPPPPPPPPLVSAAGG 960



 Score = 30.3 bits (65), Expect(2) = 0.021
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 891 PPPPPPPPXXXGGGGG 938
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 26.2 bits (55), Expect(2) = 0.48
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 894 PPPPPPPXXXGGGGGG 941
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 0.021
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 888 PPPPPPPP 911
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 0.48
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 891 PPPPPPPP 914
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
 Frame = +3

Query: 762 KKXPPPPPPXXKKXXXXXP----------PPXXXXXXXPXKKXXPXXXXXXXPPPPPPP 908
           KK PPPPPP  ++     P          PP             P        PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.9 bits (64), Expect = 0.76
 Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
 Frame = +3

Query: 771 PPPPPPXXKKXXXXXPPPXXXXXXXPXKKXXPXXXXXXXPPP---------PPPPPPXXX 923
           PPPPPP         P P       P             PPP         PP PPP   
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 924 G 926
           G
Sbjct: 397 G 397



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = +3

Query: 762 KKXPPPPPPXXKKXXXXXPPPXXXXXXXPXKKXXPXXXXXXXPPPPPP 905
           +  PPPPPP         PPP             P        P  PP
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405



 Score = 24.2 bits (50), Expect(2) = 1.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 888 PPPPPPPPPXXXGGGGGGXG 947
           PPPPPPP     G    G G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG 330



 Score = 23.4 bits (48), Expect(2) = 1.1
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +3

Query: 774 PPPPPXXKKXXXXXPPPXXXXXXXPXKKXXPXXXXXXXPPPPPP 905
           PPP P         PP        P     P       PP PPP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMN-PAINSTSKPPLPPP 295


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 888 PPPPPPPPP 914
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 1057 PPPPPXPP 1034
            PPPPP PP
Sbjct: 306  PPPPPPPP 313



 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 946 PXPPPPPP 923
           P PPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 888 PPPPPPPPP 914
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
 Frame = +3

Query: 771 PPPPPPXXKKXXXXXPPPXXXXXXXPXKKXXPXXXXXXX----PPPPPPPPP 914
           PPPPP    +      P              P           P PPPPPPP
Sbjct: 193 PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 2.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 888 PPPPPPPP 911
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 2.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 891 PPPPPPPP 914
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +3

Query: 777 PPPPXXKKXXXXXPPPXXXXXXXPXKKXXPXXXXXXXPPPPPP 905
           PPPP   K     PPP             P         PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 2   GGTPGGPGEKFPSG 43
           GG  GGPGE FP G
Sbjct: 81  GGPGGGPGEGFPGG 94


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 888 PPPPPPPP 911
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 891 PPPPPPPP 914
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 771 PPPPPPXXKKXXXXXPPP 824
           PPPPPP  +      PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 771 PPPPPPXXKKXXXXXPPPXXXXXXXPXKKXXP 866
           PPPPPP   +     PPP         K   P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 888  PPPPPPPP 911
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 891  PPPPPPPP 914
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 888 PPPPPPPP 911
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 891 PPPPPPPP 914
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,300
Number of Sequences: 5004
Number of extensions: 34157
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)