Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_B08
         (1238 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.12 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect(2) = 0.12
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 891 PPPPPPPPXXXG 926
           P PPPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 888 PPPPPPPPPXXXGGG 932
           PP P PPPP     G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 946 PXPPPPPP 923
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect(2) = 0.12
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 762 KKXPPPPPP 788
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 763 KXXPPPPPP 789
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 888  PPPPPPPP 911
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.45
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 891  PPPPPPPP 914
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 894  PPPPPPPXXXG 926
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 436  PPPXPPPXXGGKKF 477
            PPP PPP   G+ +
Sbjct: 1355 PPPPPPPPSSGQAY 1368



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 1057 PPPPPXPP 1034
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 1055 PPPPXPPP 1032
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 946  PXPPPPPP 923
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 897  PPPPPPXXXGG 929
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 419 SPPXXPXPPKKKXPPXKXRGPP 354
           SP   P  P++  PP   +GPP
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPP 47


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 946  PXPPPPPP 923
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 888  PPPPPPPP 911
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 891  PPPPPPPP 914
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,332
Number of Sequences: 438
Number of extensions: 7704
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42262176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)