Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_B06
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.005
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.019
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.7  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.9  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 555 PPPGGXXXXPPPPPPXXXKKKKXXPPPPP 641
           PPP      PPPPPP         PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 35.1 bits (77), Expect = 0.014
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 555 PPPGGXXXXPPPPPPXXXKKKKXXPPPPPXXXXGGGA 665
           P P      PPPPPP         PPPPP     GG+
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790



 Score = 32.3 bits (70), Expect = 0.099
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 581 PPPPPPXXXXKKKKXXPPPPXXXXGGGGXR 670
           PPPPPP          PPPP      GG R
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
 Frame = +3

Query: 555 PPPGGXXXXPPP-----PPPXXXKKKKXXPPPPPXXXXGGGAXXP 674
           PPP      P P     PPP         PPPPP     G    P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 518 PPPPPXXGXGXKXTXXGGGXPPPP 447
           PPPPP  G        G G PPPP
Sbjct: 762 PPPPPPPGVA------GAGPPPPP 779



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 339 GGXXPPPPXGGXXGGXXFXQXXGXPPPXP 425
           GG  PPPP  G  G        G PPP P
Sbjct: 759 GGPPPPPPPPGVAGA-------GPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 558 PPGGXXXXPPPPPPXXXKKKKXXPPPPP 641
           PPG     PPPPPP      +  PPPPP
Sbjct: 5   PPGNPP--PPPPPPGFEPPSQPPPPPPP 30



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 555 PPPG--GXXXXPPPPPPXXXKKKKXXPP 632
           PPPG       PPPPPP   KK+K   P
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +2

Query: 557 PPXGXXXX--PPPPPPXXXXKKKKXXPP 634
           PP G      PPPPPP    KK+K   P
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 558 PPGGXXXXPPPPPPXXXKKKKXXPPP 635
           PP G    PPPPPP         PPP
Sbjct: 354 PPQGRSA-PPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 555 PPPGGXXXXPPPPPPXXXKKKKXXPPPPPXXXXGGGA 665
           PPP         PPP    +    PP PP    G  A
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +3

Query: 555 PPPGGXXXXPPPPPPXXXKKKKXXPPPPPXXXXGGGAXXP 674
           PPP       PP            PPPPP     G    P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/37 (29%), Positives = 12/37 (32%)
 Frame = +3

Query: 555 PPPGGXXXXPPPPPPXXXKKKKXXPPPPPXXXXGGGA 665
           PPP        PP           PPPPP      G+
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 555  PPPGGXXXXPPPPPPXXXKKKKXXPPPP 638
            PPP      PPP  P         PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 555  PPPGGXXXXPPPPPPXXXKKKKXXPPPPP 641
            PPP      PP  PP         PPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 582 PPPPPPXXXKKKKXXPPPPP 641
           P PP P      K  PPPPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 564 GGXXXXPPPPPPXXXKKKKXXPPPPPXXXXGGGA 665
           GG    PPPPPP     K    P P       GA
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAPADNKGDMGA 336


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 588 PPPPXXXKKKKXXPPPP 638
           PPPP   K  +  PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPP 224


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 21.8 bits (44), Expect(2) = 9.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 582 PPPPPPXXXK 611
           PPPPPP   K
Sbjct: 907 PPPPPPLPVK 916



 Score = 21.8 bits (44), Expect(2) = 9.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 588 PPPPXXXKKKKXXPPPPPXXXXGGG 662
           PPPP         PPPPP     GG
Sbjct: 945 PPPP---------PPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,109
Number of Sequences: 5004
Number of extensions: 38080
Number of successful extensions: 345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)