Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_B05
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.46 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.80 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   5.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect(2) = 0.46
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 410 GGXXPPPPPPXF 375
           G   PPPPPP F
Sbjct: 7   GNPPPPPPPPGF 18



 Score = 23.4 bits (48), Expect(2) = 0.46
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 398 PPPPPPXFXK 369
           PPPPPP + K
Sbjct: 25  PPPPPPGYVK 34


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 422 GXXGGGXXPPPPPP 381
           G  G G  PPPPPP
Sbjct: 769 GVAGAGPPPPPPPP 782



 Score = 24.6 bits (51), Expect(2) = 0.80
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 225 PNPPPFXF*XGPPPP 269
           P PPP     GPPPP
Sbjct: 750 PVPPPAPIMGGPPPP 764



 Score = 22.6 bits (46), Expect(2) = 0.80
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 381 GGGGGGXXPPPXXPP 425
           G  G G  PPP  PP
Sbjct: 769 GVAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 425 GGXXGGGXXPPPPPP 381
           G    GG  PPPPPP
Sbjct: 298 GDSANGGLPPPPPPP 312


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 382 GGGGGGXXPPPXXPPXGGGGXKKXXGGGG 468
           GGG GG       PP G GG     G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,219
Number of Sequences: 5004
Number of extensions: 16157
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)