Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_B04
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 199 2e-51
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 199 2e-51
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 199 2e-51
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 199 2e-51
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 199 2e-51
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 199 2e-51
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 47 1e-05
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 47 1e-05
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 199 bits (486), Expect = 2e-51
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 705 AHIMEIQLNGGTIEDKVKWAXXHLEKPI 788
AH++EIQ+NGGTIE KV WA HLEK +
Sbjct: 178 AHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 137 WQDEDGKKLIEADFAKL 153
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 199 bits (486), Expect = 2e-51
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 705 AHIMEIQLNGGTIEDKVKWAXXHLEKPI 788
AH++EIQ+NGGTIE KV WA HLEK +
Sbjct: 178 AHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 137 WQDEDGKKLIEADFAKL 153
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 199 bits (486), Expect = 2e-51
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 137 WQDEDGKKLIEADFAKL 153
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 199 bits (486), Expect = 2e-51
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 705 AHIMEIQLNGGTIEDKVKWAXXHLEKPI 788
AH++EIQ+NGGTIE KV WA HLEK +
Sbjct: 178 AHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 137 WQDEDGKKLIEADFAKL 153
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 199 bits (486), Expect = 2e-51
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 137 WQDEDGKKLIEADFAKL 153
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 199 bits (486), Expect = 2e-51
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 705 AHIMEIQLNGGTIEDKVKWAXXHLEKPI 788
AH++EIQ+NGGTIE KV WA HLEK +
Sbjct: 178 AHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 137 WQDEDGKKLIEADFAKL 153
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 705 AHIMEIQLNGGTIEDKVKWAXXHLEKPI 788
AH++EIQ+NGGTIE KV WA HLEK +
Sbjct: 80 AHLVEIQVNGGTIEQKVDWAREHLEKQV 107
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 135
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 39 WQDEDGKKLIEADFAKL 55
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 705 AHIMEIQLNGGTIEDKVKWAXXHLEKPI 788
AH++EIQ+NGGTIE KV WA HLEK +
Sbjct: 80 AHLVEIQVNGGTIEQKVDWAREHLEKQV 107
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 135
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKM 630
WQDE G+K IE DF K+
Sbjct: 39 WQDEDGKKLIEADFAKL 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,332,663
Number of Sequences: 27780
Number of extensions: 409321
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -