Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_B01
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 268 7e-73
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 34 0.029
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 31 0.27
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 29 0.62
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.62
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.62
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.82
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.4
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 7.6
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 268 bits (657), Expect = 7e-73
Identities = 123/180 (68%), Positives = 149/180 (82%), Gaps = 1/180 (0%)
Frame = +3
Query: 282 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 458
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 459 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 638
+DKP+NPSSHEVV+W+K+IL+VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 639 VAVFNLHSAVXNIQKVTQGLXKLRGALFXKAPLISAVKRQLRVRTVYDSKLLEFDXXKIL 818
V V LH +V + V + L GALF + PLISAVKRQLR+R++Y+SKL+EFD + L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNL 188
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.029
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 528 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 644
K GH GTLDP +G L+V + T+ + S + K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 30.7 bits (66), Expect = 0.27
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +3
Query: 462 DKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 641
+KP PS H ++S+ K+E T ++ T K G IV R S +N GKE V
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV--PRGN--YYSIKNIGKEAV 618
Query: 642 AVFNLHSAVXNIQKVTQGL 698
++ H A ++ +G+
Sbjct: 619 RLYYTH-ATDTLENKRRGI 636
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.62
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = +3
Query: 453 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGK 632
IN D P P SHE+V IL SG + P+ CI+ K N G
Sbjct: 76 INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126
Query: 633 EYVAVFNLH 659
EYV V ++
Sbjct: 127 EYVNVSQMN 135
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.62
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 435 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 542
++K + +D+P+N E V+W++ L E GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 336 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 425
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 351 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 491
++DR + + NH +P P +P K P+ + ++ N D + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 339 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 449
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 330 KRCPASSRSPKVRF*SRQSSEKLPTKHHPCFFSFSSQKVSRYRAAVPPSF 181
KRC A+++ ++ R+ E LP K P S S++ Y +++ P F
Sbjct: 23 KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 364 KRSKFFNNKGQ*AVSSFFT 308
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 520 KSKRLVTRARS--IRKLRVALSFA*TAPRDSSNHNRTPAKST*PF 648
KS+ ++R+ I++L + A + P SSN +TP K T PF
Sbjct: 553 KSQNKMSRSSKLQIKQLYGQVLHALSLPLPSSNDEQTPVKETIPF 597
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,579
Number of Sequences: 5004
Number of extensions: 68765
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -