Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_B01
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical pr...   269   1e-72
U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical
           protein K01G5.5 protein.
          Length = 445

 Score =  269 bits (660), Expect = 1e-72
 Identities = 125/192 (65%), Positives = 148/192 (77%)
 Frame = +3

Query: 246 DGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 425
           +G  L   Q  G F++  S    KLD + WPLLLKN+D+LNVRTNHYTP   G SPLKR 
Sbjct: 11  EGDDLAEAQQKGSFQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRD 70

Query: 426 ISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 605
           I +Y+ SGF N+DKPSNPSSHEVVSWIKRIL+ EKTGHSGTLDPKV+GCLIVCIDR TRL
Sbjct: 71  IKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRL 130

Query: 606 VKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXKAPLISAVKRQLRVRTVYDS 785
            KSQQ AGKEY+ +F LH  V + +KV Q L KL GALF + PLISAVKRQLR+RTVY++
Sbjct: 131 AKSQQGAGKEYICIFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYEN 190

Query: 786 KLLEFDXXKILG 821
           K +E+D  + +G
Sbjct: 191 KFIEYDPAQQMG 202


>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 239 KQGWCFVGSFSDDWRLQNRTFGEREEAGHRLLAFVVEKLRS 361
           K GW +   F ++WR++    G  + AG  +LA V   L+S
Sbjct: 317 KNGWFYHTEFDEEWRIEP---GAIQRAGENVLAVVRAILKS 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,374
Number of Sequences: 27780
Number of extensions: 386027
Number of successful extensions: 907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)