Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_B01
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.16 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   1.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 549 ACPSDQSFRLLKYVLSMKLLRGSWDCSVCR 460
           A P D +  + +YV+  K+ +GSW+  + R
Sbjct: 897 AAPYDGNSPIKRYVIEYKISKGSWETDIDR 926



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 402  GNSPLKRPISDY-VKSGF--INVDKPSNPSSHEVVSWI 506
            GNSP+KR + +Y +  G    ++D+   P S + V+ +
Sbjct: 902  GNSPIKRYVIEYKISKGSWETDIDRVLVPGSQQNVAGV 939


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -2

Query: 357 RSFSTTKASKRCPASSRSPKVRF*SRQ-----SSEKLPTKHH 247
           + FS++   +R P+SSRSP     + Q     + EK    HH
Sbjct: 26  KRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHH 67


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 667 TAECKLKTATYSLPAFCCDLTSLVARSMQTIRQPVT 560
           T + KL   TY+L    CDLT    R  + +R  +T
Sbjct: 351 TVQNKLYEETYALAPAGCDLTIDNLRKAKYLRACIT 386


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 474 NPSSHEVVSWIKRI 515
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 474 NPSSHEVVSWIKRI 515
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 763 RSCRFTADISGAXWNRAPRSXSKPCVTF 680
           +SCR+TA ++G   N AP S + P V +
Sbjct: 146 KSCRYTASLAG---NVAPAS-ADPMVNY 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,946
Number of Sequences: 438
Number of extensions: 4374
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)