Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_P22
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.44
05_05_0227 - 23449579-23450459,23450574-23450691 31 1.3
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 30 1.8
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 30 1.8
03_06_0180 + 32175658-32178145,32178765-32178808 29 3.1
11_05_0086 + 18964493-18965737,18965896-18966360 29 4.1
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 29 4.1
01_01_0140 + 1265785-1265902,1266424-1266845 29 4.1
01_01_1137 + 9017211-9018584 28 7.2
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 28 9.5
08_02_0707 - 20212190-20214592 28 9.5
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 28 9.5
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 9.5
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 9.5
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 9.5
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 451 TEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 573
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 391 SHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRR 546
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 269 RLDGXGGRPTGPPNDEITPPARTADIGAP 183
R DG GGRP+ P E T P R GAP
Sbjct: 231 RGDGGGGRPSAPARREGTDPCRPVLGGAP 259
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +2
Query: 287 GLGGPQPRKSHLRLPVQTHKTFYHYANFLPQQILPATTQTTILRVPPLLHDVTPTLRNPT 466
GL P K H+ F +FLP +I L+VPP LH V P P
Sbjct: 57 GLLSFDPEKRLTAAEAMEHRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPP 116
Query: 467 AN 472
A+
Sbjct: 117 AS 118
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 578 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLGSSV 450
+R R A R C GSAG R R SA V+ + RL + V
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>03_06_0180 + 32175658-32178145,32178765-32178808
Length = 843
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 243 RPASXTVEAICPVLADWVGRNRGSLTSGYLCRLTRHFTTMQTS 371
RP S T+ ++ P L D G N+G GY+ R H S
Sbjct: 345 RPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 239 GPPNDEITPPARTADIGAPALRLHLR*GAPPRRRL 135
GPP D PP T + A L H R PP R L
Sbjct: 82 GPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRAL 116
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 523 PAEPEHRRI-ARHERTGRLILQVTTTSECVNFSSPRKTCLLSCLLACWSPEVIERVVLLV 699
P EP+ ++ ARH GRL++++ + F++P + LL+ C ++ V+
Sbjct: 95 PKEPKAVQVRARHGSLGRLLVRLGNQLDGKTFTAPLTSTLLALATECGPQSLLAGVIR-- 152
Query: 700 LNRVDSKIQRQ-FTVSCPGLLY 762
+ S+ +R+ V GLLY
Sbjct: 153 ERKGSSQAERKGIEVEETGLLY 174
>01_01_0140 + 1265785-1265902,1266424-1266845
Length = 179
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -1
Query: 335 AQVAGGETSA--VAAHPVRENRADRLDGXGGRPTGPPNDEITPPARTADIGAPA 180
A+ AGGE +A A+ NRA R G T D PA A APA
Sbjct: 90 ARAAGGEDAAGGEASRASSANRASRARAAAGEDTVGREDSRASPANRARAAAPA 143
>01_01_1137 + 9017211-9018584
Length = 457
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 374 VRSLHSGKMSCESAQVAGGETSAVAAHPVRENRADR 267
++ L SG + + +VAGG V AHP+ E+ R
Sbjct: 264 IKRLQSGIRARAAGKVAGGRVVRVEAHPIPEHPRPR 299
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 220 SRLQHELPILEPPRSGCTCARVRRLVGDCAVAGPTRDVNVCF 95
S LQH LPI+ P RS +C+ R + G + C+
Sbjct: 220 SLLQHFLPIMNPVRSESSCSSSRVIAISACFTGMSLICRGCY 261
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 391 SHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIARH 558
SHH +++ S + S TE +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 338 SAQVAGGETSAVAAHPVRENRADRLDGXGGRPTG 237
S +GG +A AA V ADR+ G G+P G
Sbjct: 62 SPSPSGGRHAAPAAAAVGSKEADRVAGLPGQPAG 95
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 602 SEVVVTCKIRRPVRS--CLAMRRC 537
S++ +TCKI RPVRS C RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 439 CYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHR 543
C + T+EP+R+ + T L + H P E E R
Sbjct: 5 CEAGTDEPSRDDVKGTGNGILENGHSHKPEEEEWR 39
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 602 SEVVVTCKIRRPVRS--CLAMRRC 537
S++ +TCKI RPVRS C RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,607,202
Number of Sequences: 37544
Number of extensions: 529860
Number of successful extensions: 1809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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