Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_P13
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 187 2e-48
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 186 4e-48
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 185 6e-48
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.58
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 4.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 4.1
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 7.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 9.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 187 bits (455), Expect = 2e-48
Identities = 92/148 (62%), Positives = 105/148 (70%)
Frame = -1
Query: 702 IFLRXRLKYALTGNEVLKXCEQRLIKVDGKXXXXXXXXXXLWDVVSIEKTNELFRLIYDV 523
+FLR RLKYAL G EV QRLIKVDGK DV+S+EKT E FRL+YD+
Sbjct: 46 VFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDI 105
Query: 522 KGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA 343
KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLE 165
Query: 342 TTKIMDFIKFEFGELVYDHGRP*LGACG 259
T KI FIKF+ V G +G G
Sbjct: 166 TNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 114 bits (275), Expect = 1e-26
Identities = 50/78 (64%), Positives = 66/78 (84%)
Frame = -2
Query: 293 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 114
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 113 KGIRLTIAEERDKRIAAK 60
KG++L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 746 PSTGPXKXRECLPL 705
PS GP K RECLPL
Sbjct: 31 PSPGPHKARECLPL 44
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 186 bits (452), Expect = 4e-48
Identities = 91/148 (61%), Positives = 105/148 (70%)
Frame = -1
Query: 702 IFLRXRLKYALTGNEVLKXCEQRLIKVDGKXXXXXXXXXXLWDVVSIEKTNELFRLIYDV 523
+FLR RLKYAL G EV QRLIKVDGK DV+S++KT E FRL+YD+
Sbjct: 46 VFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDI 105
Query: 522 KGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA 343
KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLE 165
Query: 342 TTKIMDFIKFEFGELVYDHGRP*LGACG 259
T KI FIKF+ V G +G G
Sbjct: 166 TNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 114 bits (275), Expect = 1e-26
Identities = 50/78 (64%), Positives = 66/78 (84%)
Frame = -2
Query: 293 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 114
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 113 KGIRLTIAEERDKRIAAK 60
KG++L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 746 PSTGPXKXRECLPL 705
PS GP K RECLPL
Sbjct: 31 PSPGPHKARECLPL 44
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 185 bits (451), Expect = 6e-48
Identities = 91/148 (61%), Positives = 105/148 (70%)
Frame = -1
Query: 702 IFLRXRLKYALTGNEVLKXCEQRLIKVDGKXXXXXXXXXXLWDVVSIEKTNELFRLIYDV 523
+FLR RLKYAL G EV QRLI+VDGK DV+S+EKT E FRL+YD+
Sbjct: 46 VFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDI 105
Query: 522 KGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA 343
KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLE 165
Query: 342 TTKIMDFIKFEFGELVYDHGRP*LGACG 259
T KI FIKF+ V G +G G
Sbjct: 166 TNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 115 bits (277), Expect = 7e-27
Identities = 50/78 (64%), Positives = 66/78 (84%)
Frame = -2
Query: 293 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 114
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKG 241
Query: 113 KGIRLTIAEERDKRIAAK 60
KG++L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 746 PSTGPXKXRECLPL 705
PS GP K RECLPL
Sbjct: 31 PSPGPHKARECLPL 44
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 129 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 254
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 376 QSQRFHPVRHCNYED 332
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 576 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 400
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 399 IR 394
++
Sbjct: 1778 LK 1779
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 572 LSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 462
LS+++ L+NCF+ S + D + LR L +K
Sbjct: 424 LSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 481 SLLRGDTVDCESALNIID*TKQ 546
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,918
Number of Sequences: 5004
Number of extensions: 64465
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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