Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_P09
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 134 1e-32
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 4e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 59 8e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 2e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 42 1e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 33 0.047
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 28 1.3
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar... 27 2.3
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 5.4
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 5.4
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 7.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 9.4
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.4
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 134 bits (324), Expect = 1e-32
Identities = 61/67 (91%), Positives = 65/67 (97%)
Frame = -1
Query: 523 IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 344
IADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 309 IADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPG 368
Query: 343 IVHRKCF 323
IV+RKCF
Sbjct: 369 IVYRKCF 375
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/43 (72%), Positives = 33/43 (76%)
Frame = -3
Query: 680 AQRLFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 552
A FQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+
Sbjct: 257 APEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVM 299
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/29 (79%), Positives = 23/29 (79%)
Frame = -2
Query: 732 YELPDGQVITIGNERFRCPEAXFPTLVLG 646
YELPDGQVITIGNERFR PEA F LG
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALG 268
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Frame = -1
Query: 514 RMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP- 347
R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G
Sbjct: 365 RLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSD 423
Query: 346 --SIVHRKC 326
+++ ++C
Sbjct: 424 RLALIEKRC 432
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 632 GIHETTYNSIMKCDVDIRKDLYANTVL 552
GI + N I +CDVDIR L N ++
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIV 352
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 732 YELPDGQVITIGNERFRCPEAXF 664
+E PDG + G ER++ PE F
Sbjct: 264 FEFPDGSRMMFGAERYQIPEHLF 286
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 58.8 bits (136), Expect = 8e-10
Identities = 26/65 (40%), Positives = 46/65 (70%)
Frame = -1
Query: 517 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 338
+R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++
Sbjct: 316 ERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVI 374
Query: 337 HRKCF 323
R+ F
Sbjct: 375 FRRRF 379
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -3
Query: 680 AQRLFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 552
A + F P +G EA G+H + SI+ D+D+R LY+N VL
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVL 304
Score = 34.3 bits (75), Expect = 0.020
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 732 YELPDGQVITIGNERFRCPEAXFPTLVLG 646
Y+LPD Q IT+G E F PE F ++G
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNPEMMG 273
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = -1
Query: 523 IADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEYDESG 350
+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 359 LSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 632 GIHETTYNSIMKCDVDIRKDLYANTVL 552
G+HE Y SI+ CD ++R L N V+
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVV 349
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 732 YELPDGQVITIGNERFRCPEAXF 664
+E PDG G ERFR E F
Sbjct: 281 FEFPDGVTHKFGQERFRISEILF 303
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -1
Query: 472 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 350
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -2
Query: 732 YELPDGQVITIGNERFRCPEAXFPTLVLG 646
Y LPDG+VI +G+ER+ CPE F ++G
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQPHLVG 268
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -3
Query: 665 FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 552
FQP +G E G+ E +++I DVDIRK LY VL
Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVL 299
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 469 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 332
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 683 VAQRLFFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVL 552
+A +FF P + + E N + +D+RK LY N VL
Sbjct: 288 LAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVL 332
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.1 bits (72), Expect = 0.047
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -1
Query: 514 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 338
R+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 653 RIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = -3
Query: 557 VLXRWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVD 378
VL RWY PW + KG+ + +E + SSR + + W+D YL +++D
Sbjct: 480 VLGRWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEID 530
Query: 377 LETGV 363
+ + V
Sbjct: 531 MVSAV 535
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 430 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 329
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBP23A10.03c |||ACN9 family mitochondrial
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 115
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +1
Query: 613 YVVSWMPQASIPKNEGWKXSLWATESFVSDSDDLTVGKFVKFSXXL 750
++ SW A +NE WK ++ + +D +G+ + S L
Sbjct: 63 FLSSWERYADALENESWKQEKYSNTDLLESLNDQQIGQLYELSKAL 108
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -1
Query: 520 ADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESG 350
A +++ I + + I +I PP + ++ W G I + ++WI ++ G
Sbjct: 546 AHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLG 605
Query: 349 PSIVHRK 329
++ K
Sbjct: 606 SRVLQYK 612
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 718 RSGHHYRKRKIPLPRGXFSNPRSWVWKLAASTR 620
RSGH R LPR FSN R +L+A R
Sbjct: 140 RSGHPNRSIYTQLPRNEFSNARVLWNRLSARDR 172
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 544 HRXNTVLAYKSLRMSTSHF-MMELYVVSWMPQASIPKNEGWKXSLWA 681
H+ T +A S + + + ++ V+W P S+P + W L+A
Sbjct: 121 HQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVSLPSSSPWGVCLFA 167
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 438 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 343
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 505 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 395
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +1
Query: 571 KSLRMSTSHFMMELYVVSWMPQASIPKNEGWKXSLWATESFVSDSDDLTVGKFVKFSXXL 750
++L ST H + EL V S +N L T SFV +D+++VG F S
Sbjct: 151 ETLLSSTQHQLTELKDVMHSMSDSHEQNNALHPPLSRTTSFV--ADNVSVGSFAS-STSG 207
Query: 751 LDXXVAIXAR 780
LD AR
Sbjct: 208 LDILTGTSAR 217
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -3
Query: 734 FTNFPTVRSSLSETKDSVAQRLFFQPSFLGMEACG---IHETTYNSIMKCDVDIRKDL 570
F NF + +SLS KD+ A SFL E G I N ++ VD DL
Sbjct: 356 FQNFSSPSTSLSAPKDTPAVIQSINTSFLNNERAGRGNIKTVDQNQLINRIVDKLPDL 413
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 656 RVGKXASGQRNLSFP 700
R+GK ASG N++FP
Sbjct: 725 RIGKDASGSSNINFP 739
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,690
Number of Sequences: 5004
Number of extensions: 55570
Number of successful extensions: 177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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