Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_P09
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             103   1e-24
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   10.0 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   10.0 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   10.0 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   10.0 

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  103 bits (248), Expect = 1e-24
 Identities = 49/50 (98%), Positives = 50/50 (100%)
 Frame = -1

Query: 523 IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 374
           IADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 84  IADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 90.2 bits (214), Expect = 2e-20
 Identities = 46/73 (63%), Positives = 48/73 (65%)
 Frame = -3

Query: 770 MATXXSSXSXENFTNFPTVRSSLSETKDSVAQRLFFQPSFLGMEACGIHETTYNSIMKCD 591
           MAT  SS S E     P  +      +        FQPSFLGMEACGIHETTYNSIMKCD
Sbjct: 2   MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCD 61

Query: 590 VDIRKDLYANTVL 552
           VDIRKDLYANTVL
Sbjct: 62  VDIRKDLYANTVL 74


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 82  KVVLSXFSTYNHHS*DYKKSF 144
           K++ S  + YN+++ +YKK +
Sbjct: 80  KIISSLSNNYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 82  KVVLSXFSTYNHHS*DYKKSF 144
           K++ S  + YN+++ +YKK +
Sbjct: 80  KIISSLSNNYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 82  KVVLSXFSTYNHHS*DYKKSF 144
           K++ S  + YN+++ +YKK +
Sbjct: 80  KIISSLSNNYNYNNNNYKKLY 100


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 662 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 552
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,639
Number of Sequences: 438
Number of extensions: 4225
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)