Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_P07
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 157 2e-39
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 153 3e-38
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 38 0.001
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.44
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 29 1.0
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 157 bits (380), Expect = 2e-39
Identities = 76/118 (64%), Positives = 85/118 (72%)
Frame = -3
Query: 708 FXAHTGATPIAGRFTPGXLLTRSKLHSREPRFLIVFDPAQDHQPITEASYVNIPVIALCN 529
F AHTGAT IAGRFTPG REPR ++V DP D Q I EAS+VNIPVIALC+
Sbjct: 92 FAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCD 151
Query: 528 TDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDP
Sbjct: 152 TDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -2
Query: 775 IXNPXXXXVILXXPFGQRAVLKXXRAHRCYAYCGTXHTRXFTNQIQAAF 629
I NP V+ +G RAVLK A G FTN I +
Sbjct: 70 IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 153 bits (371), Expect = 3e-38
Identities = 75/118 (63%), Positives = 84/118 (71%)
Frame = -3
Query: 708 FXAHTGATPIAGRFTPGXLLTRSKLHSREPRFLIVFDPAQDHQPITEASYVNIPVIALCN 529
F AHTGAT IAGRFTPG REPR +IV DP D Q I EAS+VNIPVIALC+
Sbjct: 93 FAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCD 152
Query: 528 TDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDP
Sbjct: 153 TDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = -2
Query: 775 IXNPXXXXVILXXPFGQRAVLKXXRAHRCYAYCGTXHTRXFTNQIQAAF 629
I NP VI P+G RAVLK A G FTN I +
Sbjct: 71 IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -3
Query: 621 PRFLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
P +++ +P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 441 AR 436
+R
Sbjct: 240 SR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 350 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 325 ACCSSFSLSSGVTVEEQINHNIPALVTGKHTTKPQHFTCQQ 447
A + LSS VT Q+ +N P T K K +HF QQ
Sbjct: 28 ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 419 VVCFPVTSAGMLWLICSSTVTPEESEKD 336
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,947
Number of Sequences: 5004
Number of extensions: 54949
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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