Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_P05
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   124   2e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.062
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   1.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (306), Expect = 2e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -2

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188

Query: 415 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 320
           G L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 30/42 (71%), Positives = 34/42 (80%)
 Frame = -3

Query: 789 RAVVAIENPXDVXVISSRPFGQRAVLKFAAHTGATPIAGRFT 664
           R +  IENP DV V+S+R +G RAVLKFAAHTGAT IAGRFT
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFT 106



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -1

Query: 662 PGAFTNQIQAAFREPRLLIVLDP 594
           PG FTN I   +REPRL++V DP
Sbjct: 107 PGNFTNYITRTYREPRLIVVTDP 129


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  124 bits (298), Expect = 2e-29
 Identities = 58/90 (64%), Positives = 69/90 (76%)
 Frame = -2

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 416
           P  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 415 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 326
           G + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 33/42 (78%), Positives = 35/42 (83%)
 Frame = -3

Query: 789 RAVVAIENPXDVXVISSRPFGQRAVLKFAAHTGATPIAGRFT 664
           R +  IENP DV VISSRP+G RAVLKFAAHTGAT IAGRFT
Sbjct: 66  RVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFT 107



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 662 PGAFTNQIQAAFREPRLLIVLDP 594
           PG FTN I   +REPRL+IV DP
Sbjct: 108 PGNFTNYITRTYREPRLIIVTDP 130


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 595 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 434
           P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 188 PLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -2

Query: 667 HXQVLLLTRSKLHSVNL---VS*LYWTPAQDH--QPITEASYVNIPVIALCNTDSPLRFV 503
           H   L+LT +     NL   VS +  T   +H  +  T A    +  + LC+ +S  RF 
Sbjct: 38  HLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFA 96

Query: 502 DIAIPCNTKSSHSI 461
           D+A+  NTK +H I
Sbjct: 97  DLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 463 IGLMWWLLAREVLRLRGVLPRDQRWD 386
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 408 FPVTSAGML--WLICSSTVTLKKVKRM 334
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,773
Number of Sequences: 5004
Number of extensions: 59193
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)