Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_P04
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   150   3e-37
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   148   8e-37
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   1.0  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    26   7.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  150 bits (363), Expect = 3e-37
 Identities = 71/111 (63%), Positives = 83/111 (74%)
 Frame = -3

Query: 663 PGAFTNQIQAASREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 484
           PG FTN I    REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N
Sbjct: 107 PGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTN 166

Query: 483 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPGESEKDEQ 331
            K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDP E E++E+
Sbjct: 167 NKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = -1

Query: 773 ENPXDVXVISSRPFGQRAVLKFAAHXRXYAYCGTF 669
           ENP DV V+S+R +G RAVLKFAAH    A  G F
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  148 bits (359), Expect = 8e-37
 Identities = 71/112 (63%), Positives = 83/112 (74%)
 Frame = -3

Query: 663 PGAFTNQIQAASREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 484
           PG FTN I    REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N
Sbjct: 108 PGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPIN 167

Query: 483 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPGESEKDEQQ 328
            K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDP E E++E+Q
Sbjct: 168 NKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 24/35 (68%), Positives = 25/35 (71%)
 Frame = -1

Query: 773 ENPXDVXVISSRPFGQRAVLKFAAHXRXYAYCGTF 669
           ENP DV VISSRP+G RAVLKFAAH    A  G F
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -3

Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 441 AR 436
           +R
Sbjct: 240 SR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 359 SR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
           S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 102 SKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 ASREPRLLIVLDPAQDHQPITEASY 559
           A R+ RLL+++ P   H P+    Y
Sbjct: 62  AGRDDRLLLIVGPCSLHDPVAAKEY 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,115
Number of Sequences: 5004
Number of extensions: 55782
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)