Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_P04
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 152 3e-37
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 151 8e-37
09_04_0225 - 15855544-15855727,15855796-15856406 30 1.8
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 4.3
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 29 5.6
06_03_0543 + 21967787-21970261 29 5.6
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.4
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 152 bits (369), Expect = 3e-37
Identities = 66/113 (58%), Positives = 87/113 (76%)
Frame = -3
Query: 663 PGAFTNQIQAASREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 484
PG FTNQ+Q + EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168
Query: 483 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPGESEKDEQQA 325
K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDP E+++ E++A
Sbjct: 169 NKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEA 221
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -1
Query: 773 ENPXDVXVISSRPFGQRAVLKFAAHXRXYAYCG 675
ENP D+ V S+RP+GQRAVLKFA + +A G
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 151 bits (365), Expect = 8e-37
Identities = 65/112 (58%), Positives = 85/112 (75%)
Frame = -3
Query: 663 PGAFTNQIQAASREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 484
PG FTNQ+Q + EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168
Query: 483 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPGESEKDEQQ 328
K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDP E+++ E++
Sbjct: 169 NKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -1
Query: 773 ENPXDVXVISSRPFGQRAVLKFAAHXRXYAYCG 675
ENP D+ V S+RP+GQRAVLKFA + +A G
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -3
Query: 228 GYRPACCTRCSSC-FWSTPC--SRRMVCPGTR 142
G P+ TRC SC W+T C + R CP TR
Sbjct: 171 GATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 206 VQQAGRYPQPMKPLAPVFHSSLHG 277
V+++ RYP P +PLAP+ S HG
Sbjct: 223 VEKSVRYPLPPRPLAPICVFSHHG 246
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 164 LLEQGVLQKQELQRVQQAGRYPQPMKPLAP 253
LLE+ + KQ+ Q+ QQAG P +P+AP
Sbjct: 178 LLEKLKIAKQQQQQQQQAGPEPPRGEPIAP 207
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 358 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 474
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,972,559
Number of Sequences: 37544
Number of extensions: 398820
Number of successful extensions: 1033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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