Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_P01
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    29   1.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.2  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   7.3  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.3  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   9.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 394 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 215
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 214 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 40/70 (57%)
 Frame = -1

Query: 626 KDTKGVTSRWHTKKLPRKTHQGXLGKLPALELGILLGCRSL*LVPGQKGYHHRTEMNKKI 447
           K  +G T+RW TK+LPRKTH+G L K+  +        +      G  GY HRT++N KI
Sbjct: 224 KGNEGTTARWGTKRLPRKTHRG-LRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKI 282

Query: 446 YRIGPRNPQK 417
           YRIG  +  K
Sbjct: 283 YRIGAGDDAK 292



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = -3

Query: 579 P*DTPRXLRKVACIGAWHPSRVSFTVARA 493
           P  T R LRKVACIGAWHP+ V +TVARA
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARA 267


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 394 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 215
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 214 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 40/70 (57%)
 Frame = -1

Query: 626 KDTKGVTSRWHTKKLPRKTHQGXLGKLPALELGILLGCRSL*LVPGQKGYHHRTEMNKKI 447
           K  +G T+RW TK+LPRKTH+G L K+  +        +      G  GY HRT++N KI
Sbjct: 224 KGNEGTTARWGTKRLPRKTHRG-LRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKI 282

Query: 446 YRIGPRNPQK 417
           YRIG  +  K
Sbjct: 283 YRIGAGDDAK 292



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = -3

Query: 579 P*DTPRXLRKVACIGAWHPSRVSFTVARA 493
           P  T R LRKVACIGAWHP+ V +TVARA
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARA 267


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 510 FTVARAWS---ERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 352
           F + R WS     L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 315 FMLVRHWSLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 134 HGYTQEGSYSRRSCGYHNPS 75
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 474 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 334
           SP+    + L+Y   E  +   K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 588 LXVPTRSDTFGILXPWVTPMQSI 656
           L VP+  D FGI+ P + PM ++
Sbjct: 619 LGVPSSVDGFGIILPCIIPMGTV 641


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 381 SVDALFLITLPSFLWIPW 434
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 638 DTNAVNHFIXGQTQNRQGIXFLPNVXWAXFHFXPRRV 748
           + +A+  F+  +T +R    F  ++ W  FH+ P  +
Sbjct: 87  ECSAIPVFLDDETADRHYNGFSNSILWPLFHYHPGEI 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,768
Number of Sequences: 5004
Number of extensions: 65342
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)