Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_P01
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 144 6e-35
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 137 8e-33
11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871 30 2.5
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.3
06_03_0915 - 25929433-25930893 29 5.8
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 7.7
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 144 bits (350), Expect = 6e-35
Identities = 93/210 (44%), Positives = 117/210 (55%), Gaps = 5/210 (2%)
Frame = -2
Query: 733 KVKXGPXNIWEKPYPLSILCLPXDEMIDCIGVTXGQRIPKVSLLVGTXRSYPVRHTKGS* 554
KV G +EK P+ + DEMID IGVT G+ V G R H
Sbjct: 194 KVDYG-YKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK 251
Query: 553 ESCLHWSLASF*GVVHCSSCLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNN-----A 389
+C+ G H + +V TV + + ++KK K+ K+ A
Sbjct: 252 VACI--------GAWHPA-----RVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAA 298
Query: 388 STEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 209
TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I
Sbjct: 299 CTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 358
Query: 208 NLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 359 KLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/64 (46%), Positives = 38/64 (59%)
Frame = -1
Query: 626 KDTKGVTSRWHTKKLPRKTHQGXLGKLPALELGILLGCRSL*LVPGQKGYHHRTEMNKKI 447
K +GV +RW +LPRKTH+G L K+ + GQ GYHHRTEMNKK+
Sbjct: 227 KGYEGVVTRWGVTRLPRKTHRG-LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKV 285
Query: 446 YRIG 435
Y+IG
Sbjct: 286 YKIG 289
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = -3
Query: 579 P*DTPRXLRKVACIGAWHPSRVSFTVARA 493
P T R LRKVACIGAWHP+RVS+TVARA
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARA 270
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 137 bits (332), Expect = 8e-33
Identities = 89/202 (44%), Positives = 113/202 (55%), Gaps = 5/202 (2%)
Frame = -2
Query: 733 KVKXGPXNIWEKPYPLSILCLPXDEMIDCIGVTXGQRIPKVSLLVGTXRSYPVRHTKGS* 554
KV G +EK P+ + DEMID IGVT G+ V G R H
Sbjct: 194 KVDYG-YKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK 251
Query: 553 ESCLHWSLASF*GVVHCSSCLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNN-----A 389
+C+ G H + +V TV + + ++KK K+ K+ A
Sbjct: 252 VACI--------GAWHPA-----RVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAA 298
Query: 388 STEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 209
TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I
Sbjct: 299 CTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 358
Query: 208 NLKFIDTSSKFGHGRFQTPADK 143
LKFIDTSSKFGHGRFQT +K
Sbjct: 359 KLKFIDTSSKFGHGRFQTTDEK 380
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/64 (46%), Positives = 38/64 (59%)
Frame = -1
Query: 626 KDTKGVTSRWHTKKLPRKTHQGXLGKLPALELGILLGCRSL*LVPGQKGYHHRTEMNKKI 447
K +GV +RW +LPRKTH+G L K+ + GQ GYHHRTEMNKK+
Sbjct: 227 KGYEGVVTRWGVTRLPRKTHRG-LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKV 285
Query: 446 YRIG 435
Y+IG
Sbjct: 286 YKIG 289
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = -3
Query: 579 P*DTPRXLRKVACIGAWHPSRVSFTVARA 493
P T R LRKVACIGAWHP+RVS+TVARA
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARA 270
>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
Length = 148
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 490 PGTSYSERHPRRMPSSNAGNFPKXPW 567
P S R P RM S GNFP PW
Sbjct: 118 PTRSPCHRPPLRMASPRGGNFPVGPW 143
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 376 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 281
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>06_03_0915 - 25929433-25930893
Length = 486
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 335 GETSHRCNGFLRQIILSRCIVFNNFAILFVDSLVQYDRFSCSFQY 469
GE H+ G I+ C++ NN +L V ++ D S S ++
Sbjct: 138 GEVVHKALGRPASIVAQMCVIINNAGVLIVYLIIIGDVMSGSLKH 182
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 348 IGVMDFSDRSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 479
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,167,381
Number of Sequences: 37544
Number of extensions: 439352
Number of successful extensions: 1058
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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