Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_P01
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.8  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 392 IVFNNFAILFVDSLVQYDRFS 454
           I+ N F  L+ +SLV++ RF+
Sbjct: 17  ILINYFIFLYFNSLVRFRRFT 37


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 420 LWIPWSNTIDFLVHFSTVMITFLTRHEL 503
           L+IP S+ + FL + S + +  LTR  L
Sbjct: 301 LYIPESDLVTFLCYPSVMNLDDLTRRSL 328


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 420 LWIPWSNTIDFLVHFSTVMITFLTRHEL 503
           L+IP S+ + FL + S + +  LTR  L
Sbjct: 301 LYIPESDLVTFLCYPSVMNLDDLTRRSL 328


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 567 VCLTG*LLXVPTRSDTFGILXPWV 638
           +C+T  +L V  RS    ++ PWV
Sbjct: 318 ICVTVVVLNVHFRSPQTHVMAPWV 341


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 752 VVPFEXXSEXGPXEHLGETXSPVDSVFAXR*N 657
           V   E      P EH G+T + V++  A R N
Sbjct: 120 VTTVELVDATDPGEHNGDTVTDVEAGLASRTN 151


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 428 SLVQYDRFSCSFQYGDDNLSDQARATVNDTLEGCQA 535
           S   YD +S + + G D LS         + +GC A
Sbjct: 137 STSSYDPYSPNSKIGRDELSQPGSLNGYGSSDGCDA 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,549
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)