Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_O06
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 29 0.77
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 3.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 27 3.1
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 26 5.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.1
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 9.4
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 9.4
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 25 9.4
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 186 ALAWGWPWWEAWCTRWEG 133
A+ G WWEAW T W G
Sbjct: 79 AVESGLSWWEAWITVWVG 96
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 508 SSAAEYFNTLFRLTPPAQPPMMYRFSPPGSTAAPAYDSARGSFAFACHEP----FCRAPT 675
SS A Y N PP Q PM Y +S + P + + SF+ + +P RAP
Sbjct: 240 SSGASYQNE--SANPPVQSPMQYSYSQGQPFSYPQHKNQ--SFSASPIDPSMSYVYRAPE 295
Query: 676 ESSSVCPSLPPXR 714
SS+ ++P R
Sbjct: 296 SFSSINANVPYGR 308
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 544 LTPPAQPPMMYRFSPPGSTA 603
LTP + PP +RF PP S A
Sbjct: 120 LTPASAPPPRFRFVPPKSDA 139
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 186 ALAWGWPWWEAWCTRWEG 133
A+ G WWEAW W G
Sbjct: 81 AIELGLNWWEAWICVWVG 98
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 303 PHAAPNGAPGCRQGGTGAPRLAPI 374
P AAP APG GG P + +
Sbjct: 623 PGAAPGAAPGAAPGGDNGPEVEEV 646
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 5.4
Identities = 23/67 (34%), Positives = 28/67 (41%)
Frame = +3
Query: 264 GPVRAPRRDEPRPPHAAPNGAPGCRQGGTGAPRLAPIYGQSLSGRQAVPCVTASQCPQRS 443
G P+ PP AP+GAP + AP P+ S SG VP A P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP---PVPAPS-SGIPPVPKPAAGVPP--- 1190
Query: 444 LPPHSRA 464
+PP S A
Sbjct: 1191 VPPPSEA 1197
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = +1
Query: 544 LTPPAQPPMMYRFSPPGSTAAPAYDSARGSFAFACHEPF-CRAPTESSSVCPSLP 705
L PP P PP +AP S + P AP +S PSLP
Sbjct: 137 LRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 550 PPAQPPMMYRFSPPGSTAAPAYDSARGSFAFACHEPFCRAPTESSSVCPSLP 705
P A PPM + PP + AP +++ +FA P AP +S P P
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFA--PPAGHAPNVTSE-SPKFP 239
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 513 SSRILQYSFQVDPSGPAADDVQILSPRVDRRSGVRQRE-GQLRLRLPRAV--LQSPDR 677
SSR +YS++ + PA D L R++ G +R QL RAV L++P +
Sbjct: 179 SSRPGRYSYRTKSASPALIDTSTLDSRLNFTMGRLERSIAQLSKNTMRAVSHLENPPK 236
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 652 EPFCRAPTESSSVCPSLPPXRTXS 723
EP PT S + P LPP R+ S
Sbjct: 188 EPSVEPPTSSFPIQPPLPPSRSIS 211
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 130 DGKEFLSCVECLYSPDGEWTSLCVPPANIRSIANHSEKKKK 8
DG FL C + P+GEW P + S A+ S K
Sbjct: 102 DGLTFLGCPVHI-GPNGEWAKRRKPRTTVESNASSSHLVSK 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,965
Number of Sequences: 5004
Number of extensions: 65319
Number of successful extensions: 267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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