Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_O04
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.34 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   9.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
 Frame = +1

Query: 424  PXXLKKXXPP-NKXXXXXGSHXPPTPAXTXKKXXXXTPS-AXSLXASVGXPQI----MXX 585
            P  +    PP  K      S  PP PA + +      PS A  + A  G P +    +  
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA 1101

Query: 586  XPXXXPXXXXXPXLSAXGGXPXPXPSL-XPPAP 681
             P   P     P  +  G  P P PS+  PP P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +2

Query: 401 PLPXXXXPXXX*KXXXPPTXXPPGXXXIXPPPPXXXXKXXXXXPPPPXXS 550
           P P    P        PP   PPG     PPPP          PPPP  S
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---------PPPPPAVS 786


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 464 PPGXXXIXPPPPXXXXKXXXXXPPPP 541
           PPG     PPPP          PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 449 PPTXXPPGXXXIXPPPPXXXXKXXXXXPPPP 541
           PPT  P       PPPP          PP P
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.139    0.462 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,174
Number of Sequences: 5004
Number of extensions: 13158
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)