Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_M24
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 35 0.085
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 31 1.4
12_01_0304 - 2299676-2299938,2300493-2300841 29 3.2
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 4.2
12_02_1049 + 25681284-25681349,25684409-25684627,25684720-256849... 29 5.6
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 29 5.6
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.6
11_06_0160 - 20794974-20795977,20796241-20796295 28 7.4
03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763... 28 7.4
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 28 7.4
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701 28 7.4
08_02_1615 + 28257275-28258428,28258523-28259144 28 9.8
05_06_0078 - 25412770-25413852 28 9.8
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.8
>06_03_1310 + 29238644-29240260
Length = 538
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 668 KSPDSIHQPPQT*HPFPSIPLAPY*KEFAPGLKPPLSSEAPSAYLTPS-SLGMXKGVSPP 492
+SP H PP+ P P P +P P PP SE+P + + PS S G SPP
Sbjct: 382 RSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASPP 439
>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Frame = -1
Query: 762 NPXSXRXXIGGSRPYASSHPPLRSRXHQPDHQIP--RFHTPTTPDLTSISINPPGAVLEG 589
NP + GS+ YA ++PP S P +P +H P P P AV
Sbjct: 869 NPEQYQQPTLGSQLYAGANPPYTSGQSTPYQGVPPTTYHQPRPPTQFQTVPTAPPAVSSA 928
Query: 588 VRAGVKASVVIRGSIS 541
G S + G ++
Sbjct: 929 TVPGTTPSQMFPGPVA 944
>12_01_0304 - 2299676-2299938,2300493-2300841
Length = 203
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = +1
Query: 559 DNGGFNPGANSF*YGARGIDGNGC*VWGGWCMESGDLMIGLMXPRSQGRVA 711
DNGG A G+DG GC V G SG G + P S GR A
Sbjct: 80 DNGGGGATARQLRLDGVGVDGAGCGVVSGRLDGSGG--AGTLGPDSTGRPA 128
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 726 RPYASSHPPLRSRXHQPDHQIPRFHTP 646
RP+ H P H P H PR H P
Sbjct: 407 RPWCRPHTPRPRSPHSPTHPRPRLHHP 433
>12_02_1049 +
25681284-25681349,25684409-25684627,25684720-25684980,
25685060-25685362
Length = 282
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 633 LTSISINPPGAVLEGVRAGVKASVVIRGSISVS 535
+ S +N PG+ ++ +R GV ++RG + V+
Sbjct: 69 IRSFDVNKPGSEVDEIRGGVAGGSILRGVLRVN 101
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 633 LTSISINPPGAVLEGVRAGVKASVVIRGSISVS 535
+ S +N PG+ ++ +R GV ++RG + V+
Sbjct: 279 IRSFDVNKPGSEVDEIRGGVAGGSILRGVLRVN 311
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 74 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 220
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>11_06_0160 - 20794974-20795977,20796241-20796295
Length = 352
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 64 GIKILRRLQRSRKKHGEDLPTGGRSRRKREK 156
G +LRR + SR++HG L G +R+ R++
Sbjct: 166 GGALLRRAESSRRQHGRALREGREARQDRKR 196
>03_04_0123 +
17475020-17475243,17475367-17475445,17476295-17476393,
17476499-17476682,17477139-17477206,17477530-17477787,
17477996-17478049,17478149-17478355,17478507-17478633,
17479409-17479575
Length = 488
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 706 PSPAISXTST--RSSNPPIPYTNHPRLNIHFHQSP 608
PSP + T S PP+PY N PR + +P
Sbjct: 230 PSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTP 264
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -2
Query: 626 PFPSIPLAPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMXKGVSPP 492
P P P P APG P S P+ Y T P G G PP
Sbjct: 158 PLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204
>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
Length = 369
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 700 PAISXTSTRSSNPPIPYTNHPRLNIHFHQSPW 605
PA + + SN P+P PR H + PW
Sbjct: 25 PAPAPATASQSNRPVPPLQLPRCRCHRSEGPW 56
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -2
Query: 650 HQPPQT*HPFPSIPLAPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSP 495
H PQ+ HP P P A AP PP S P ++ + L K + P
Sbjct: 42 HHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPLPP 92
>05_06_0078 - 25412770-25413852
Length = 360
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 493 GGETPLXMPSDEGVRYA-DGASDDNGGFNPGANSF*YGARGIDGNGC*VWGGWCMESG 663
G P P +GV+ DG + D G G+ GA G G V GG+ + +G
Sbjct: 31 GVAAPRPPPGGDGVKIGRDGGATDGDGEGDGSREAGDGAGGDRAGGSGVGGGFVVGAG 88
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 442 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 353
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,776,013
Number of Sequences: 37544
Number of extensions: 465410
Number of successful extensions: 1589
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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