Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_M12
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.3  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   3.1  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   5.4  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   7.1  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   7.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.4  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.4  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 159  LRSRDVRVKKKTDSIDLRDPNG---LRRRVSRFECETRLVKSHCLEPPDS 299
            L+S DV+++   D I  +DPNG   L  ++ + E    L  +H   P  S
Sbjct: 1206 LKSSDVKIRSIYDFIPTKDPNGTKLLEYQLDQTEVYLDLSGTHAASPRSS 1255


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 25/115 (21%), Positives = 48/115 (41%)
 Frame = -1

Query: 403 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 224
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 223 PFGSRRSMLSVFFLTRTSRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 59
                R+   + F+     + R G   ++C  S   V D  S+  + LG  ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 118 SVDDFRSWRGVVLGRAASCCDLLRLSPAPGDSYKK 14
           SV     W G V  +A SC   L  S   G++Y+K
Sbjct: 466 SVSAMNGWAGGVYQQALSCASQLNNSWLSGNAYQK 500


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 272 LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTYI 171
           LY  +F    R  ATS  I + EID  G+F N+++
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
 Frame = -1

Query: 469 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 290
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 289 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRTSRLRRSGYNSVRC-RGSE*SV 113
                DF + +S S+    ++S  G  R            R R +G NS  C    +  V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379

Query: 112 DDFRSWRGVVLGR 74
            + R  RG   GR
Sbjct: 380 SNARKPRGRGRGR 392


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 224 PIWIAEIDAIGFFLNTYITAP 162
           P W+AE+ AI  F++ ++ AP
Sbjct: 43  PFWLAEVLAINSFVSIHMPAP 63


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 475 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 326
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 115 VDDFRSWRGVVLGRAASCCDLLRLS 41
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,200
Number of Sequences: 5004
Number of extensions: 68143
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)