Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_M04
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   140   2e-34
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   137   2e-33
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   4.1  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   9.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  140 bits (340), Expect = 2e-34
 Identities = 66/103 (64%), Positives = 77/103 (74%)
 Frame = -3

Query: 664 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
           PG FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N
Sbjct: 107 PGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTN 166

Query: 484 TKSSHSIGLMWWLLARKVLRLRGVLPRDQRWDVVVDLFFYRXP 356
            K   SIGL+W+LLAR+VLR+RG L R   WDV+ DL+FYR P
Sbjct: 167 NKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -2

Query: 773 ENPADVXVISSRPFGQRAVLKFAXHTGATPIAGRFT 666
           ENPADV V+S+R +G RAVLKFA HTGAT IAGRFT
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFT 106


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  137 bits (331), Expect = 2e-33
 Identities = 65/103 (63%), Positives = 76/103 (73%)
 Frame = -3

Query: 664 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
           PG FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N
Sbjct: 108 PGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPIN 167

Query: 484 TKSSHSIGLMWWLLARKVLRLRGVLPRDQRWDVVVDLFFYRXP 356
            K   SIGL W+LLAR+VLRLRG + R   W+V+ DL+FYR P
Sbjct: 168 NKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = -2

Query: 773 ENPADVXVISSRPFGQRAVLKFAXHTGATPIAGRFT 666
           ENPADV VISSRP+G RAVLKFA HTGAT IAGRFT
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFT 107


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -3

Query: 622 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 443
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 442 AR 437
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 420 VVCFPVTSAGMLWLICSSTVXPEESEKD 337
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 326 ACCSSFSLSSGXTVEEQINHNIPALVTGKHTTKPQHFTCQQ 448
           A   +  LSS  T   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 357 GSR*KNKSTTTSQRWSRGSTPRSL-NTLRANN 449
           GS  +  S+    RW   STP SL N++  NN
Sbjct: 302 GSDEQEVSSMMGNRWQHSSTPASLFNSVERNN 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,916
Number of Sequences: 5004
Number of extensions: 59836
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)