Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_M04
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   145   3e-35
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   145   3e-35
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.2  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.4  
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601...    28   9.8  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  145 bits (352), Expect = 3e-35
 Identities = 63/103 (61%), Positives = 78/103 (75%)
 Frame = -3

Query: 664 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
           PG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168

Query: 484 TKSSHSIGLMWWLLARKVLRLRGVLPRDQRWDVVVDLFFYRXP 356
            K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYR P
Sbjct: 169 NKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = -2

Query: 773 ENPADVXVISSRPFGQRAVLKFAXHTGATPIAGRFTXRCF 654
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR T   F
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  145 bits (352), Expect = 3e-35
 Identities = 63/103 (61%), Positives = 79/103 (76%)
 Frame = -3

Query: 664 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
           PG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168

Query: 484 TKSSHSIGLMWWLLARKVLRLRGVLPRDQRWDVVVDLFFYRXP 356
            K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYR P
Sbjct: 169 NKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = -2

Query: 773 ENPADVXVISSRPFGQRAVLKFAXHTGATPIAGRFTXRCF 654
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR T   F
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>01_01_0777 -
           6017131-6017243,6018069-6018339,6018432-6018617,
           6018703-6018735,6018827-6018925,6019042-6019281,
           6019747-6020064,6020197-6020254,6020333-6020389,
           6020577-6020792,6020885-6021000
          Length = 568

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 429 NTLRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAI 545
           N L+ANN H   +EW+ + +H +    N   E+ L K I
Sbjct: 481 NELKANNGHSMALEWKRVTIH-MYSQRNKRPEAPLAKVI 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,837,725
Number of Sequences: 37544
Number of extensions: 427025
Number of successful extensions: 1129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)