Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_L23
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 2.3
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 27 2.3
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 7.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 7.1
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 7.1
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 9.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.4
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.4
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -3
Query: 402 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 223
+S W T + G +S + + S G + SPS+S+PS A+ S S+
Sbjct: 21 KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80
Query: 222 THRHS 208
+ +
Sbjct: 81 VRKEA 85
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/73 (28%), Positives = 28/73 (38%)
Frame = -3
Query: 732 GTPTHRVSRQEVERRAXXXXXXXXXXXXLTKLETRSTTSNLGRHQAPTASTTARSSGYSI 553
GT T + E + ET+ TT+ Q TA T SSGY
Sbjct: 1351 GTETQATTATETQATTATEVQTTTGATGTAGTETQVTTAT--EVQPTTAVTETSSSGYYT 1408
Query: 552 TILQDSRRSAMVP 514
TI+ + S +VP
Sbjct: 1409 TIVSSTVVSTVVP 1421
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 306 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 181
N + RH SSS+ S + K STS+L SP S P L
Sbjct: 14 NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 357 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLS 199
KPS +R G S ++ A K S S P + T +++ +HSP+S
Sbjct: 24 KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 558 NNLKSARLWMPSEPGAFLGWRLWIASLTS 644
N +A S+ GAF+ W LWI L +
Sbjct: 487 NRFFTANFTPTSKTGAFVSWCLWITVLVA 515
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 218 WVSSLVEPFVASDGFDEDGDRCLWCLK 298
W P VA D DEDG +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = -3
Query: 402 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 229
++R LH + R GKP +YG I + + P ++P+ + +TS
Sbjct: 66 KTRKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEPHVTSPTKSEFATTS 123
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 338 KHVITDPPDPLTVLLGTTSTGH 273
+H++ +PP PLTVL GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.4
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 354 PSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSG 175
PS S +YG+ ++ + S SSS+ S++T + T SP S S SG
Sbjct: 30 PSASVSI-NYGTLSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG 88
Query: 174 SRFRXRW*ILRSTALARVSVSNS 106
+ + S + S +NS
Sbjct: 89 TSVITASDVSASNEIISSSTNNS 111
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 309 INGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 190
+NG +HH +R +SS L++ GS +E + H P + P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,419
Number of Sequences: 5004
Number of extensions: 55037
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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