Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_L22
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.57 
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    29   1.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    23   3.8  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   4.0  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   4.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.4  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 387  PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 563
            P T+ T +   PP+          P  ++    TST  T  T +    P T+++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 564  P 566
            P
Sbjct: 1703 P 1703



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
 Frame = +3

Query: 372 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 524
           P   L  ++ TTI     P  + +     KPT        ANT    TST  T  T +  
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380

Query: 525 RNPNTAAS 548
             P T++S
Sbjct: 381 STPITSSS 388


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 509 NLHPPAEPEHRRIARHERTGRL 574
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 349  LTTMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 498
            L TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1354 LVTMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
 Frame = +2

Query: 176 SAGAPISAVRAGGVISSFGGPVGRPPLPSRRSARFSRTGWAATAEVSPPATCADSQDILP 355
           S+ + IS+  +    SSF          S+ S+ FS T  ++++  S   T + S    P
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSS----SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393

Query: 356 PCKLLTATNLTSHHANYNFTGSTS-LTRCYSHTEEANR--EHLSSTHKHALHRKNLHPPA 526
                 +++L+SH ++ +   S++ ++  + H   ++R   H SS    +L  K +   +
Sbjct: 394 ASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTAS 453

Query: 527 EPEHRRIARH--ERTGRLILQVTTTSDVS 607
                  + H  ER+   ++ V T S  S
Sbjct: 454 SSSLLTSSSHTYERSTVYVVTVETVSSGS 482


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 654 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 556
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 22.6 bits (46), Expect(2) = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 377 TNLTSHHANYNFTGSTSLTRCYS 445
           ++++SH + Y+ T STSL   Y+
Sbjct: 178 SSVSSHSSPYSTTSSTSLYSLYN 200



 Score = 22.2 bits (45), Expect(2) = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 188 PISAVRAGGVISSFGGPVGRPPLPSRRSARFS 283
           P + V  GG   S   P+ RPPLPS  S+  S
Sbjct: 157 PETPVSPGG---SLVHPLPRPPLPSSVSSHSS 185


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 371 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 550
           T T   S    ++ + S S +    H  +  +E   S H+H  HR++     EP    ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163

Query: 551 RHER 562
           RH R
Sbjct: 164 RHHR 167


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 235 TRRPASVTVEAICPVLADWVGRDRGSLTSGYLCR 336
           TR+ + + ++A+CPVL + VG     LT   L R
Sbjct: 362 TRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 455 EANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSD 601
           E N ++L +  K      +L PP +    R    E+TG L  Q T+TS+
Sbjct: 60  EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 444 PTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNA 563
           P L +PT+   Q R      GK  +   NP +  SP + A
Sbjct: 219 PLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMA 258


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 357 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 473
           H N     + P T   T   VPP  H  T T+  PT  ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,507
Number of Sequences: 5004
Number of extensions: 65504
Number of successful extensions: 218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)