Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_L21
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 165 5e-42
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 160 2e-40
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 4e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.44
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 25 9.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.4
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 165 bits (402), Expect = 5e-42
Identities = 84/140 (60%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Frame = -1
Query: 770 IETPVXXCHFIT-AXGQRAVXKFXAHTXXTXIXGRFTXGAFTNQIQAAFCEPXLLIVFDP 594
IE P C T G RAV KF AHT T I GRFT G FTN I + EP L++V DP
Sbjct: 70 IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDP 129
Query: 593 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSPHSIGLMWWLLAREVLRLRG 414
D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG
Sbjct: 130 RADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRG 189
Query: 413 VLPRDQRWDVVVDLFFYRXP 354
L R WDV+ DL+FYR P
Sbjct: 190 TLSRSAPWDVMPDLYFYRDP 209
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 160 bits (389), Expect = 2e-40
Identities = 82/140 (58%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
Frame = -1
Query: 770 IETPVXXCHFITAX-GQRAVXKFXAHTXXTXIXGRFTXGAFTNQIQAAFCEPXLLIVFDP 594
IE P C + G RAV KF AHT T I GRFT G FTN I + EP L+IV DP
Sbjct: 71 IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDP 130
Query: 593 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSPHSIGLMWWLLAREVLRLRG 414
D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG
Sbjct: 131 RADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRG 190
Query: 413 VLPRDQRWDVVVDLFFYRXP 354
+ R W+V+ DL+FYR P
Sbjct: 191 NISRTTAWEVMPDLYFYRDP 210
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -1
Query: 620 PXLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSPHSIGLMWWLL 441
P L+++ +P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 440 AR 435
+R
Sbjct: 240 SR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 349 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 418 VVCFPVTSAGMLWLICSSTVXPEESEKD 335
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSPHSI 462
T A + + LC+ +S RF D+A+ NTK H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 479 WCCMG*QCPQILAG 520
WCC G C ++LAG
Sbjct: 55 WCCNGKGCKKVLAG 68
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 598 TLHKTINPLLKLHMSTFL*LLCATQTPR-*DLWTLLSHATPSLPTLLV 458
+L+K + PLL + F LL + +TP+ DL+T L P +LL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,573
Number of Sequences: 5004
Number of extensions: 46939
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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