Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_L17
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.027
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    29   1.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.4  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   3.1  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.1  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   5.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.2  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.5  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.5  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   9.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = -2

Query: 737  SPLCIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA 558
            +P  I PP P      +P  + P+ H P+ P    +S +P  P  +   P + P LSS+A
Sbjct: 965  APPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLAR--VPPV-PKLSSKA 1021

Query: 557  PSAYLTPSS 531
            P   L PS+
Sbjct: 1022 PPVPL-PSA 1029


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 125 IYQLAVDLGGRGRSLNRCREKSSFVVLKNRPDVV 226
           ++Q A+ LG  GRS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 686 PDHQ-IPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 513
           P HQ    FHTPT P  T +S    +P    +    +  PLS +A S  LT S L   + 
Sbjct: 131 PKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS 188

Query: 512 VSPPYFQVNDESQA 471
            SPP   V  +S +
Sbjct: 189 -SPPLSTVLQKSHS 201


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -3

Query: 364 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 185
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 184 LSASIQASPPSSEIYRQL 131
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 110 RNMARIYQLAVDLGGRGRSLNRCREKSSFVVLKNRPDVVVQYG 238
           R +A  Y+  + LGG+  S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 265 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 170
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 716 PFPCDXGYINPDHQ-IPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 540
           PF      +N DH   P   +P   +  + S+NP TP     +P + PP+S+ +P     
Sbjct: 243 PFATRRPSLNTDHHGRPILLSPL--NYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAV 300

Query: 539 PSS 531
           P S
Sbjct: 301 PMS 303


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 475 KLRALLVVIPRILRSPPPTHPLIEDV 398
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = -2

Query: 734 PLCIKPPFPCDXGYINPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 555
           PL  + P+    G   P     +F       + S++ +PL       +P L  P SS +P
Sbjct: 289 PLHSQQPYVDTPGIDAPSDLEAKFSDLGVSSVVSVT-SPLQSCTNSPSPPLSSPASSASP 347

Query: 554 SAYLTPSSLGMXKGVS 507
           S  L   SLG+    S
Sbjct: 348 SESLRNESLGIKSAKS 363


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 152 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 54
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 340 LVTHKELALKVSSIIGTRVYVFDPSCY 260
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 480 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 394
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -2

Query: 680 HQIPRFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSAYL 543
           H  P    P+TP   + SI+P TP     Y  + A  L  PLS  + +AYL
Sbjct: 295 HCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTAYL 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,495
Number of Sequences: 5004
Number of extensions: 58781
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)