Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_L14
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   4.8  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   6.4  

>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 295 RKRGRKPKNATGAVTPRGKP 236
           RKRGRKPKN +     + KP
Sbjct: 96  RKRGRKPKNISTLEHDKSKP 115


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 649 TDVDIQYADADYE--NLTTYKLFQQHVRPMLVKENPKVPVSKLMMLVAAKWRMFCETNPH 476
           TD  ++  D++++  +LT  K  +  V+P   K+N K  +SK       K  +  E+   
Sbjct: 71  TDTQLKGQDSNHKKASLTETKTEKAKVKPKAKKKNSKEKISKSSKQDEHKTDVHKESVSK 130

Query: 475 LSTSVPQSMGSEENT 431
           LS ++      +EN+
Sbjct: 131 LSKNLESRNNRDENS 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,954
Number of Sequences: 5004
Number of extensions: 35222
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)