Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_L14
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    32   0.41 
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           30   1.6  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    29   5.0  
05_03_0514 - 14921653-14921760,14921992-14922054,14922162-149223...    29   5.0  
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535...    29   5.0  
11_06_0461 + 23856949-23857004,23859814-23859886,23860040-23861398     28   6.6  
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344...    28   6.6  

>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
 Frame = -3

Query: 451 MGSEENTNTSATSDYVSKRPGRTPKXXXXXXXXXXXXXXXXXXXXXEGATVPRKRGRKPK 272
           M + E  +TS+      +RPGR PK                       +   RKRGRKPK
Sbjct: 1   MDNHELASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAENGTHDPASGQKRKRGRKPK 60

Query: 271 NATGAVTPRGKPGRKX*STYX*RSSSAREN-EPAA 170
               A       G    S+    + SA ++ +PA+
Sbjct: 61  PPAAAAAAASSDGHHHPSSPLAAAVSASDSPDPAS 95


>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 604 TTYKLFQQHVRPMLVKENPKVPVSKLMMLVAAKWR 500
           +++ LF +  R  L +E P V  S L  LV+ KW+
Sbjct: 419 SSFLLFSKEARRQLAEERPGVASSTLTALVSVKWK 453


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 301 VPRKRGRKPKNATGAV-TPRGKPGRK 227
           V RKRGR PKN  GA   P  KP +K
Sbjct: 119 VKRKRGRPPKNRDGAAPPPPPKPVKK 144


>05_03_0514 -
           14921653-14921760,14921992-14922054,14922162-14922365,
           14923318-14923369,14924099-14924706
          Length = 344

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 653 PYRC*HTICGCGLRKLDYIQTV 588
           P+ C   +CGCG+R L Y+  V
Sbjct: 83  PFLCLDAMCGCGVRALRYLAQV 104


>04_04_1122 +
           31052497-31052629,31053133-31053191,31053285-31053579,
           31054099-31054279,31054739-31054956,31055522-31055739,
           31055842-31055958,31056106-31056128,31056223-31056438,
           31056536-31056677,31056822-31057067,31057659-31057856,
           31058331-31058379,31060835-31060911,31061266-31061551,
           31061661-31061841,31062149-31062344,31062630-31062738,
           31062861-31062961,31063155-31063267,31063347-31063442,
           31063531-31063746,31063857-31063995,31064087-31064332,
           31064605-31064940
          Length = 1396

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 492 QNIRHFAATSIINFDTGTFGFSLTSIGRTCC*NSLYVVKFS*SASAY 632
           +NI HFAA S I++        L  I      N L+ +KF+   SAY
Sbjct: 388 RNIEHFAAMSYISYAQNNIPDELERIDSWVKENRLHELKFARQKSAY 434


>11_06_0461 + 23856949-23857004,23859814-23859886,23860040-23861398
          Length = 495

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 631 YADADYENLTTYKLFQQHVRPMLVKENPKVPVS 533
           Y + D+ +  +Y L + H+RP+L+   P+ P S
Sbjct: 275 YINLDFSSSPSYLLQELHIRPLLLHGIPERPAS 307


>02_01_0478 -
           3442222-3442227,3442777-3442848,3442966-3443137,
           3443388-3443500,3443771-3443908,3444016-3444221,
           3444317-3444388,3444484-3444532,3444635-3444714,
           3444817-3445132,3445242-3445415,3445513-3446139,
           3446235-3446297,3446399-3446470,3446602-3446664,
           3446741-3446872,3447779-3447889,3449273-3449371,
           3450117-3450194
          Length = 880

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 215 LXLKIKFSKRKRTSSEEEQEGSAVNSDSD 129
           L  K K  +R    S EE EG+++NS+SD
Sbjct: 99  LICKRKMPRRTIDISSEESEGNSINSESD 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,282
Number of Sequences: 37544
Number of extensions: 235663
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)