Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_L11
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.83 
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    29   1.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   4.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.8  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.7  
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    26   7.7  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    26   7.7  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = -2

Query: 707 PXSPAISXT*PDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT- 531
           P  P ++ + P   +P  +  PP    PFP  P  P          PP    AP +Y T 
Sbjct: 512 PGMPNLNMSQPP-MVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP---GAPGSYNTS 567

Query: 530 -PSSLGMXKGVSPP 492
             S+L    GVS P
Sbjct: 568 ESSNLNAPPGVSMP 581


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 256 CYFSTPPFDTVLYDNIRTVLKDNKTALLPCIYSSF 152
           CY   P + + L ++I+T+L DN   ++P    +F
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAALFTF 202


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 473 HHSLENKGAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKS 637
           H S  NK A    P P      ++  P     A TP+   SS A  GL E++ KS
Sbjct: 511 HTSSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKS 565


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -2

Query: 677 PDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSL 519
           P    P S  +PP +  P PSIP  P     +P   PP+ S+AP     PSSL
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPP---IPSSL 171


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 466 KLRALLVVIPRILRSPPPTHPLIEDV 389
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 678 TRSSNPRFHTPTTPDLTSISINPPDAVLEGVRAGVKASVVIRGSISVSHPLVT 520
           T   N  FH PT    TS S     A  +GV +    S+ +  + SV+    T
Sbjct: 809 TNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAYT 861


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 142 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 232 DTVLYDNIRTVLKDNKTALLPCIYSSFSPFLRDLPPVGRSSPCFFRLLW 86
           D   Y+N    L + +     C  ++ SP L DLPP     P F RL +
Sbjct: 61  DPQFYENEAFELANQELEGDQCSRNNVSPVLTDLPPYAAEHP-FSRLAY 108


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 494 GAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKSGV 643
           G + +  CP T+G    +EP++       A+TP+S    G+   +   GV
Sbjct: 81  GGRVVHDCPTTKGIGYFLEPILILCLF--AKTPTSLTLTGVTSSNEDIGV 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,187
Number of Sequences: 5004
Number of extensions: 59358
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)