Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_L11
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1310 + 29238644-29240260                                         35   0.071
05_06_0078 - 25412770-25413852                                         29   3.5  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   4.7  
01_01_0070 - 542603-542686,542803-543441                               29   4.7  
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54...    29   6.2  
10_01_0131 - 1541964-1542161,1542235-1542390,1543046-1543923,154...    28   8.1  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    28   8.1  

>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 35.1 bits (77), Expect = 0.071
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 671 HQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPS-SLGMXKGVSP 495
           H+ P   H PP+   P P  P +P      P   PP  SE+P + + PS S     G SP
Sbjct: 381 HRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASP 438

Query: 494 P 492
           P
Sbjct: 439 P 439


>05_06_0078 - 25412770-25413852
          Length = 360

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +1

Query: 493 GGETPLXMPSDEGVRYA-DGASDDNGGFNPGANSF*YGVRGIDGNGC*VWGGWCMESGI* 669
           G   P   P  +GV+   DG + D  G   G+     G  G    G  V GG+ + +G  
Sbjct: 31  GVAAPRPPPGGDGVKIGRDGGATDGDGEGDGSREAGDGAGGDRAGGSGVGGGFVVGAGAA 90

Query: 670 *SGYVXEIAGXXG 708
             G+   + G  G
Sbjct: 91  SGGWEGTVGGGAG 103


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
 Frame = -2

Query: 713  HXPXSPAISXT*PDHQIPDSIHQPPQT*HPFPS---IPLTPY*KEFAPGLKPPLSSEAPS 543
            + P SP+ S T P +    S + P    +   S    P +P     +P   P      PS
Sbjct: 1759 YSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPS 1818

Query: 542  AYLTPSSLGMXKGVSPPY 489
               +PSS       SP Y
Sbjct: 1819 HAYSPSSPNYYSSTSPTY 1836


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
 Frame = -2

Query: 707 PXSPAISXT*PDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPL---SSEAPSAY 537
           P +PA++   P    P     PP T  P    P+TP      P   PP    S+  P A 
Sbjct: 72  PVAPAVAPVTPPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAA 131

Query: 536 LTPSSLGMXKGVSPP 492
              +   +    +PP
Sbjct: 132 PAEAPAALPPATTPP 146


>02_01_0077 -
           546033-546223,546314-546566,546635-546865,547165-547331,
           547369-548008
          Length = 493

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
 Frame = -2

Query: 707 PXSPAISXT*PDHQIPDSI-HQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT 531
           P SP  S + P+  +PDS   Q P T  P P  P     + +   L P      P   + 
Sbjct: 50  PPSPGYSDS-PEPPLPDSPPSQEPDTPEPAPPTPPQQQQQPWQSPLPPRREPAPPRTVVP 108

Query: 530 PSSLGMXKGVSPPYFQVN 477
           P   G      PP   +N
Sbjct: 109 PQEPGWSSVPPPPARVIN 126


>10_01_0131 -
           1541964-1542161,1542235-1542390,1543046-1543923,
           1544060-1544135,1544162-1544191
          Length = 445

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -1

Query: 684 YITRSSNPRFHTPTTPDLTSISINPPDA---VLEGVRAGVKASVVIRGSISVSHPLVTGH 514
           Y +R S     + +TP LTS+++  PDA    L+ +++ V AS+++  +  +   L++  
Sbjct: 256 YASRFSEDYRASISTPSLTSLTLYKPDASVPSLKDMKSLVSASIILDDNTDIHELLMSLS 315

Query: 513 G*R 505
           G R
Sbjct: 316 GVR 318


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = -2

Query: 626 PFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMXKGVSPP 492
           P P  P  P     APG   P S   P+ Y T  P   G   G  PP
Sbjct: 158 PLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,544,913
Number of Sequences: 37544
Number of extensions: 451115
Number of successful extensions: 1248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)