Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_L06
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.80 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.80 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.6  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   7.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 365 GPKASQKKILIQQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPE 234
           GPK     +    G + + GKP E T  +  +   N N+K + E
Sbjct: 60  GPKNYTTPVNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKE 103


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 438 RSWCSRETQACHNGT 394
           RSW +RE+Q C+N +
Sbjct: 353 RSWVTRESQICNNSS 367


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = -3

Query: 254 NVKKEPENGDGVEEGSRKRTASTAN--------AEDPDVSIEVKQE 141
           ++ K P N +G+E  S +R  S A         A D D+S+   Q+
Sbjct: 190 SLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQ 235


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 165 IGIFCVSCACRSLSAAFLDTVTILRFFLNI 254
           I IFC + + R+ S  F+  + I  FF+ I
Sbjct: 70  IWIFCAAKSLRTPSNMFVVNLAICDFFMMI 99


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 477 QRYCLTFSGDYYDFLVNFDAVFVS*NTW*QHFGSVANSINSAVFDKYPFVSNQE-AFQRF 653
           ++YC T+    YD  + F  V        +  G +A  I++ + +  P    +E    R 
Sbjct: 64  KKYCETYKNSIYDVSMTFGPV-------PKFEGEMAEKISNELNEMCPLEKLKERRIWRD 116

Query: 654 DYSTKISLV 680
           D  TK+SL+
Sbjct: 117 DALTKLSLL 125


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 637 RPSRGLITRRR*VSSLWF 690
           RP+ GL+T R  +SSL F
Sbjct: 296 RPAAGLLTSRDFLSSLAF 313


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 174 FCVSCACRSLSAAFLDTVTILRFFLNIIVDVTV 272
           FCV  AC + +   +  V + +    I VDV V
Sbjct: 153 FCVVLACSTATVYVMSVVGLSKAPAQIPVDVLV 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,634
Number of Sequences: 438
Number of extensions: 4184
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)