Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_K24
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.99 
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   9.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 267 PPRLEPPRSNYSFAGAPFPPRTKVASPP 350
           PP   PPRSN +    P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 276  LEPPRSNYSFAGAPFPPRTKVASPP 350
            L PPRS  S +G P P  T V  PP
Sbjct: 1020 LLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +3

Query: 228 RVRQAARPRLQHGP--PRLEPPRSNYSFAGAPFPPRTKVASPPVIGS 362
           R RQ  R R    P  PR+  P   Y+     +PP T  A P   GS
Sbjct: 244 RARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPPTTSSALPNASGS 290



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 536  YGAPVWCHALTRKNVAALRRPQRAIAVRAI 447
            YG    C  LT +N++A  R Q   AVR +
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNV 1040


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 157 HPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTD 267
           H    PT++ R  R  + + R  +   +RRD+  + D
Sbjct: 38  HEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNND 74


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 622  FLXRLLPNVGVPIRWRAAXTWGWCGRWHYTGLPYGATP*PAR 497
            FL R L + G  + W       W G+W+  GL + A   P+R
Sbjct: 1729 FLTRELKHDGTNLAW-------WTGKWYSRGLGFHALSQPSR 1763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,341
Number of Sequences: 5004
Number of extensions: 31784
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)