Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_K19
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    29   0.77 
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.5  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = -2

Query: 235 AASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRR 56
           A S D+P  +SPGS D+     R    R    +S   PP+  +T T  L++    +A   
Sbjct: 203 AKSDDSPVVKSPGSNDKPSASPRISV-RSLGNSSVVRPPTRTST-TRPLSRVNVTNASGS 260

Query: 55  LKHSSTPLNPSRRK 14
           +  +ST  +PS+ K
Sbjct: 261 ISKNST--SPSKVK 272


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 124 PPSSGATWTSTLAKPKTLSARRRLKHSSTPLN 29
           P  S   W +TL KP+++    R    S+P+N
Sbjct: 885 PHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVN 916


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 274 GAIGDHDARLQREQLSAFRELSSAIC 351
           GAI  HD R+   Q+   +  SS +C
Sbjct: 283 GAIHHHDVRIANHQIGTLQGHSSEVC 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,985
Number of Sequences: 5004
Number of extensions: 42367
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)