Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_K08
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 34 0.028
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.61
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.2
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.2
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 27 4.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 4.3
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 5.6
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 7.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.5
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.9
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 9.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.9
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 33.9 bits (74), Expect = 0.028
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -2
Query: 711 SSHPXPAISXTSTRS---SNPRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKP 565
S HP P+IS T+T S S H PTTPD ++ + L P +P KP
Sbjct: 270 SEHPKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.61
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 717 YASSHPXPAISXTSTRSSNPRFHTPTTPDLTSIS 616
Y SS IS +ST N FH PT TS S
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 99 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 227
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 711 SSHPXPAISXTSTRSSNPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAY 535
+S P ++S FHTPT P T +S +P + + PLS +A S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS-- 177
Query: 534 LTPSSLGMXKGVSPPYFQVNDESQA 460
LT S L + SPP V +S +
Sbjct: 178 LTSSPLKDFQS-SPPLSTVLQKSHS 201
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 254 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 159
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = -2
Query: 693 AISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLG 514
A+ T T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 683 ALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPE 740
Query: 513 MXKGVSP 493
K V P
Sbjct: 741 YAKTVIP 747
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 353 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 174
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 173 LSASIQASLPSSEIYRQL 120
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 724 SPLCIKPPXPRDFGYINPIIKSPIPYTNHPRLNIHFHQSPD 602
+PL PP P D + NP++ P + P +F +P+
Sbjct: 212 APLSGPPPQPGDIVFSNPMLGGPDHKVSQPSETENFLPTPE 252
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 4.3
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Frame = -2
Query: 720 PYASSHPXPAISXTSTRSSNPRF--HTPTTP-DLTSISINPLTPY*KEFAPGLKPPLSSE 550
PY P ++ S SS+P P TP + S ++NP Y + PP
Sbjct: 956 PYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHGGSQIVPPPKQP 1015
Query: 549 APSAY-LTPSSLGMXKGVSPPYFQVNDESQAS 457
A L P++ PP V S S
Sbjct: 1016 ANRVVPLPPTASQRASAYEPPTVSVPSPSALS 1047
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 427 SASPLQLTPSSKTSSWPQ 374
S SP L PSS+ S WP+
Sbjct: 34 SKSPFGLNPSSRISQWPR 51
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -2
Query: 693 AISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 520
A+ ++ S F PTT S+SI+P K A +P + ++ S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPT----KSAAVSSEPNVEADVKSLSSTPAA 122
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 141 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 43
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 329 LVTHKELALKVSSIIGTRVYVFDPSCY 249
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 9.9
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -2
Query: 711 SSHPXPAISXTSTRSS-NPRFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSE 550
S+ P +S S +P P+TP + SI+P TP Y + A L PLS
Sbjct: 280 SNSDSPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVG 339
Query: 549 APSAYL 532
+ +AYL
Sbjct: 340 STTAYL 345
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 114 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 215
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,076
Number of Sequences: 5004
Number of extensions: 62338
Number of successful extensions: 213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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