Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_K06
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.78 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   7.2  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = +1

Query: 31  ITGGPEAFPVSPGQVGEQRLSQEA--WDLLTAS----RAPPKET*QLKSSCFAN*STTGS 192
           I G P+   V   QV +  L+ +    DLL  S    +  P +     SSC  + S    
Sbjct: 251 IIGAPQPVTVIRNQVKQTVLADDLVIGDLLYFSNLDLKTCPVDGILFSSSCLLDESMVTG 310

Query: 193 ESRPAEKIRRETQRADSWV 249
           ES PA K   E    DSW+
Sbjct: 311 ESVPARKFPLEDNSLDSWM 329


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = -1

Query: 552 TLTYATTWASNLSRNT*SQRRNGTSIRLCVMIIALSLPPLTTSRILITQEPVTGDG-LDT 376
           ++++A T   N S    S     +S  +    +  S  P+T+S IL T  P+T    L++
Sbjct: 357 SISFANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNS 416

Query: 375 SLRIHQIQ*PLH*TPSALTLGAGLATPVT 289
           S  I         TP   +     +TP+T
Sbjct: 417 STPITSSSILNSSTPITSSTVLNSSTPIT 445


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 526 LESIQKYMK-SASERYFDKAMRHDNRLIVAAADYFPNPDHAGASHRRRPRHVLTDPSDP 353
           +E  +K++   AS+R+ + +M   NR+I +     P  +   +    R  H+L D   P
Sbjct: 323 IEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDELRP 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,234
Number of Sequences: 5004
Number of extensions: 56478
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)