Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_K01
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   118   7e-27
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   118   7e-27
01_06_0867 - 32586254-32586574,32586756-32587172                       31   1.1  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.3  
06_03_0543 + 21967787-21970261                                         29   5.8  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.6  
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963...    28   7.6  
01_05_0535 - 23001864-23005052                                         28   7.6  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  118 bits (283), Expect = 7e-27
 Identities = 52/88 (59%), Positives = 65/88 (73%)
 Frame = -1

Query: 634 FRXPRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 455
           F  PRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 179

Query: 454 WLLAREVLRLRGVLPRDQRWDVVVDLFF 371
           WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFF 207


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  118 bits (283), Expect = 7e-27
 Identities = 52/88 (59%), Positives = 66/88 (75%)
 Frame = -1

Query: 634 FRXPRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 455
           F  PRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLF 179

Query: 454 WLLAREVLRLRGVLPRDQRWDVVVDLFF 371
           WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFF 207


>01_06_0867 - 32586254-32586574,32586756-32587172
          Length = 245

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 338 HPFHFLQG--SRLEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNV 508
           H    LQG  S LE Q+ +   AL +    T PQHF   QP H   + + ++ V +D   
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197

Query: 509 H 511
           H
Sbjct: 198 H 198


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 463 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 374
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>03_02_0865 -
           11895257-11895340,11896004-11896069,11896297-11896355,
           11896470-11896557,11897158-11897328,11897406-11897564,
           11897653-11897835,11897931-11898012,11898753-11898959,
           11899099-11899170,11901948-11902055,11902460-11902506
          Length = 441

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 367 VRRTNQPQHPSAGHGEAHHEA-STLHVPTTTTSNQ 468
           V R NQP   +A   +  HEA   L VP+  + NQ
Sbjct: 86  VERANQPNSKNANEKQQEHEAQGALQVPSMNSLNQ 120


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -1

Query: 514 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF*P*XLKKV---- 347
           FV +   C+       GL ++    E++   G+LPR + +  V+DL      L K+    
Sbjct: 792 FVSVLSACSHAGLVERGLDYF----ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYM 847

Query: 346 KRMNNKPRNRLW 311
           KRM  KP   +W
Sbjct: 848 KRMPMKPNTLIW 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,219
Number of Sequences: 37544
Number of extensions: 371240
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)