Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_H22
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 126 5e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 122 8e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 5e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 1.0
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.4
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 126 bits (303), Expect = 5e-30
Identities = 61/94 (64%), Positives = 73/94 (77%)
Frame = -1
Query: 620 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 441
RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181
Query: 440 REVLRLRGVLPRDQRWDVVVDLFFYRDPLKKVKR 339
REVLR+RG L R WDV+ DL+FYRDP ++V+R
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDLYFYRDP-EEVER 214
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -2
Query: 709 AAHTRATXIAGRFTPGAFTNQI 644
AAHT AT IAGRFTPG FTN I
Sbjct: 93 AAHTGATAIAGRFTPGNFTNYI 114
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3
Query: 795 AXAVVAIENPADVXVXSSRPFGQRAV 718
A + IENPADV V S+R +G RAV
Sbjct: 64 ARVIATIENPADVCVVSTRTYGHRAV 89
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 122 bits (293), Expect = 8e-29
Identities = 58/88 (65%), Positives = 67/88 (76%)
Frame = -1
Query: 620 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 441
RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLA
Sbjct: 123 RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLA 182
Query: 440 REVLRLRGVLPRDQRWDVVVDLFFYRDP 357
REVLRLRG + R W+V+ DL+FYRDP
Sbjct: 183 REVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -2
Query: 709 AAHTRATXIAGRFTPGAFTNQI 644
AAHT AT IAGRFTPG FTN I
Sbjct: 94 AAHTGATAIAGRFTPGNFTNYI 115
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -3
Query: 795 AXAVVAIENPADVXVXSSRPFGQRAV 718
A + IENPADV V SSRP+G RAV
Sbjct: 65 ARVIATIENPADVCVISSRPYGHRAV 90
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -1
Query: 617 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 438
L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 361 SR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 471
S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 102 SKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 534 AQSNHRNVDI*SFSNGLMVLCRVQYNQETXXHGNAAWIWLVKAPGVKRPAIXVARVCAA 710
A S+ RN S + ++C +Y +T + + +W+V A G R R AA
Sbjct: 302 ANSSRRN----SHDSNSTIICEPEYPPDTSFNSSPGRLWIVTAIGRYRDEYWTVRAEAA 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,425
Number of Sequences: 5004
Number of extensions: 53050
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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